| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_18991 |
|---|
| Symbol | HMGB3501 |
|---|
| ID | 5006737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009374 |
|---|
| Strand | - |
|---|
| Start bp | 186780 |
|---|
| End bp | 188648 |
|---|
| Gene Length | 1869 bp |
|---|
| Protein Length | 622 aa |
|---|
| Translation table | |
|---|
| GC content | 62% |
|---|
| IMG OID | 640422158 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001422680 |
|---|
| Protein GI | 145356938 |
|---|
| COG category | [B] Chromatin structure and dynamics
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG5165] Nucleosome-binding factor SPN, POB3 subunit
[COG5648] Chromatin-associated proteins containing the HMG domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0475639 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.137229 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGG AGTTTACCGT CGCGGCGCGC GCGCTCGGAC GCGGGAGCGG GACGCAGGGA
GAGTTGACGC TGAGCAAGGC GATCGGCGCG CGGTTTCGAG CGGCGACGGG CGCGGGCGAG
CAGAAGAAGA CGGAGATCGA GGCGGGGAAG GTGCGCGAGG TGCGATGGAG CGACGCGCCG
ACGGGTGGGG TGCTGCGAGT GCGATCGACG GACGGACGGA CGCTCGTGCT GGGAGGGATG
GGGACGGAGG ACGCGAAGAA CGCGGCGGAG TACGCGGCGC GCGAGCTGGG GTGCGCGAGC
GGCGAGACGA AGATGAACGT GAACGGACGG AACTGGGGCG ACGTCGCGAT CGAGGGGAGC
GGGACGGTGT TTGAGGTCGG TGGGAAGACG GCGTTTGAGA TCGATGGGCA GTACATCTCC
GAGGCGACGG TCGTCGGGAA GAGCGACGTC GTCTTGCAAT TTCACCACGA CGACACGGCG
GCGGAGAAGG ATTCTTTGGT GGAGATGTCG TTTTACGTTC CGCCGGGCAG CGAGACTTGG
AAAGGAGACG ATATGGAAGA TCCCGATGAC ACCGCGGCGA AGCGTTTGCA CGCGGCGATC
ATGTCGATCG CCGCCGCCGA CGCCGAGGCG GGCGAACCCG TGGCGGAATT CGACGGCGTC
TCCATGGTCG TCCCGAGAGG CAAGGTTTCG ATCGAGTTGC ACAACACGCA CATGCGCATG
CAATCCTCGA CGCTGGACTT CAAGGTTCAG TACAGCTCCA TCGTTCGCGT GTACTTGCTT
CCGAAGCCGC ACTCGAACCA GTCGCACGCG GTCATCGCGC TCGACCCACC GATTCGCAAG
GGACAAACGT TTTACCCGCA CATTCTCGCC ATGTTCAACG ACGACGATCA TCTCACGGTG
GAACCAAACT TGGCTGCAGA CATGAAAGAC AAGTTCCCCA CCCTCGAGTC GACTTACGAC
GGCTCCTCGG GAGAAGTCTT CGTGCGCGTA TTGAAAAACA TGGCTGGCGT CAAGTTGACG
AGACAAAGCT TATTCACCGC CTCGGCGGGC GGACACGCCA TCCGCGTGTC GCACAAGGCT
GACGTCGGCC TACTGTACCC GCTTGAAAAA GCGTTCTTCT ACTTGCCCAA ACCTCCGCTG
TTGTTGCACT ACAGCGAAGT CGATGAGGTT GAGTTTGAGC GTCACAGCGC GCAGGGCGCG
ACGAGCGGCA GGACGTTTGA CGTCTCTGTG AATATGAAGA ATGGCTCATC GTACGATTTC
CACGGCATTC AACGGTCGGA GTTCCAGAAC TTGGTTAACT TCTTGACCGC CAAACAAGTG
AGAATCTCCA ACGTCGACGC CAACGCGCGC GCGGACCAGC TCATCGCCGA AGCTTCGGAC
GACGACGACG AAGGCTACGC GCGACGCGGC GACGACGACA GCGAAGAGGA CGAAGACTTC
GCCGCGGGAA GCGAGTCCGA CGGCGGCGAG CCCACCGACA GCGATTCCGA CAGCGAAAGC
GACGAGGGCG CGAAGAAGTC GAAGAAGTCG CCCAAAGCCA AACGCGCGAA GAAGGATCCG
AACGCTCCGA AACGAGGCTT GTCCGCGTAC ATGTTCTTCT CCGCCGCCAA GCGCGCCGAA
ATCACCGCCG CTAACCCTTC GTTCGGCGTC ACCGACGTCG CCAAGGCGCT CGGCGAAAAG
TGGAAGACGA TCACCGACGA AGAAAAGAGC GTGTACCAGC AACAAGCCGA CGAGGACAAG
ATTCGATACG AGCGCGAGAT GGAAGCCTAC CGCGCCGGCG GTTCGCAGCC CAAGGTGGAG
ATCAAGGACG ACGACGACTC CGACGCCGAC GACGCCGCGC GCGACGTCGA CGCCATGGAC
GAAGATTAG
|
|---|
| Protein sequence | MSAEFTVAAR ALGRGSGTQG ELTLSKAIGA RFRAATGAGE QKKTEIEAGK VREVRWSDAP
TGGVLRVRST DGRTLVLGGM GTEDAKNAAE YAARELGCAS GETKMNVNGR NWGDVAIEGS
GTVFEVGGKT AFEIDGQYIS EATVVGKSDV VLQFHHDDTA AEKDSLVEMS FYVPPGSETW
KGDDMEDPDD TAAKRLHAAI MSIAAADAEA GEPVAEFDGV SMVVPRGKVS IELHNTHMRM
QSSTLDFKVQ YSSIVRVYLL PKPHSNQSHA VIALDPPIRK GQTFYPHILA MFNDDDHLTV
EPNLAADMKD KFPTLESTYD GSSGEVFVRV LKNMAGVKLT RQSLFTASAG GHAIRVSHKA
DVGLLYPLEK AFFYLPKPPL LLHYSEVDEV EFERHSAQGA TSGRTFDVSV NMKNGSSYDF
HGIQRSEFQN LVNFLTAKQV RISNVDANAR ADQLIAEASD DDDEGYARRG DDDSEEDEDF
AAGSESDGGE PTDSDSDSES DEGAKKSKKS PKAKRAKKDP NAPKRGLSAY MFFSAAKRAE
ITAANPSFGV TDVAKALGEK WKTITDEEKS VYQQQADEDK IRYEREMEAY RAGGSQPKVE
IKDDDDSDAD DAARDVDAMD ED
|
|---|
| |