Gene OSTLU_17718 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagOSTLU_17718 
SymbolBRAT3501 
ID5005085 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameOstreococcus lucimarinus CCE9901 
KingdomEukaryota 
Replicon accessionNC_009367 
Strand
Start bp1732 
End bp5265 
Gene Length3534 bp 
Protein Length1177 aa 
Translation table 
GC content60% 
IMG OID640420506 
Productpredicted protein 
Protein accessionXP_001420879 
Protein GI145353132 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1222] ATP-dependent 26S proteasome regulatory subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones45 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCGAC CTCGCGCGGC GTCGCGAAGC GCGCGACGAT CGTACGCGGA AAGCGAGCAA 
GCGTCGAGCG AGGACGACGA ACACCGCGCC GACGACGCCG AGGTTGACGC CGAGGAGAAG
TTTGAATCCG AGGAGGAAGA AGAGCCGCTC AAACGTCGAC GACGCGCGAC GACGACGACG
ACGACGACGT ACGGGACGAC GATGGTGCGG CGCGAGAAGC GTCGATCGAG TCGTCAGGAG
AACAAGCCTC GGAAAAGATA CGTGGACGAC GACGACGACG ATGAGTTTGT CGCCGAGCAA
GACGACGACG ACGACGACGA GTTCGAGGAG GAGGACGAGG AGGATTTCAT CGAGGACGAG
AGCGACGACG AACCGGTGCG AAGGAGTACG CGCGCAAGAG AGCGTGTGAA TAGACTCTCG
CCGACATTCA AGCAGAGAAA CGATGACGAC GAGGAGGAAG AGCTCGAAGA CGGCGAAGAA
GAGACGGACG ACGACGACAT CGGCGACGTC GCGAACAAAA CGTACCCGAA ACGCACGCGT
GGTCCGCCGC CGGAACGGTT CGCGCCTCAA CGACCCGAAA GTGGTAAAGA TCGCTCGAAT
TCCGGGCGTC CAGGATTGTT CGAACGTCGC GGTACGACGT GGAAGGATGA CAGAGACAAA
ACGTCGTCGC GCGAGCGCTC GAGACGACAG ACGTCGGGGA GGTGGATCGA TGATTCTGAA
GATTCGGACG ACGGCGAATT TAATCTCGGT GCTGGCGCCA TGGATGCGTT TAAGGCACCG
CCCGCGTATC CTCTCGCGGG CGCCGGTCCA TCCAGTGCCG CGCCGGGTCC AAACGTCGAC
GCCGAAATTA CACCAGTCAC CGTCGACCCC ACTTTGTCCT TCTCCTCGGT CGGTGGACTG
GACAAGTACG TCGACGCGCT GAAAGAGATG GTATTCTTAC CGCTCTTATA CCCAGAAGTC
TTCGCACGCT TTAAAATGAG TCCGCCGCGG GGTGTGCTCT TATACGGCGC GCCGGGCACG
GGGAAGACGC TCATCGCGCG AGCGCTCGCC GCGTCTTGCA GTCGCGCAGG CTCTGAAGTC
GCGTTCTTTA TGCGCAAGGG AGCTGACGTC TTGTCAAAAT GGGTCGGCGA ATCCGAGAGG
CAGCTGCGTC TTCTGTTCGA AGAGGCACAA AAGCGGCAGC CGGCAATAAT TTTTTTCGAC
GAACTCGACG GCTTGGCGCC CGTGCGATCG AGCAAGACTG ATCAAATTCA CAACTCTTTG
GTGGCGACCT TACTCGCGCT CATGGATGGC TTAGATAATC GAGGTCGTGT TGTCGTTCTT
GGCGCGACGA ATAGAGTGGA TTCCATCGAC GGTGCGTTAC GTCGTCCCGG GAGATTTGAT
CGCGAGCTGG CGTTTCCGCT TCCCGGCGTG AAGGCGCGCG GTGAAATTTT ACGTATTCAC
ACCAAGGCGT GGGAGCAGCG TCCGTCGGAA GCGCTCATCG ACGACCTTGC GGCGAAGTGC
GTTGGGTACT GCGGCGCCGA TTTGAAAGCC TTGTGCACCG AAGCCGCGGT TCACGCCCTT
CGCAGAAGAT ATCCGCAAAT TTACGAATCC GACGAGCGGT TGAGCATCGA CCCGAAGCAA
GTGATTCCGA GTCGAGCAGA TTTCAGAGCA GCGCTCGCGG CAATAGTTCC CGCGTCGCAT
CGTGCCGCAC GCACGCACGC GAGGCCGCTT ACGCCTTTAC AAAAGCCGCT TCTTGAGGGC
GTACTGGAGG CGTGCTTGGA GAGCATTCGC AAGACGTTTC CGCCGGCGAC GTTCATCACT
CTCGATGGCG ACGGAGAAGC TGTGGGCGTG AATTCCGGGG CCCGTCAAAT CACGGATGCT
GTCGCCGAGG AAGAAGACGA GGATATACTC GCGCAAGCGG CGGTGAGCGA TGAGGCCGCT
GGTGCGCTGC CGAGCGAATC AGCGGCGACC GCGGCGCTCG AATTTATGAG ACGTCCACCT
TGTCAGCGCA CGGCGCTTTG CATTCACGGC GCAGAAACTA GCGGTTACAA TCAGCTCACA
TCGGCGCTTT TACACGCGCT AGAGCAGTTT CCCGTCCACG CGATCGGCAT GCCATCACTT
CTCGGCGACT CTGGACGCTC GCCCGAGGAA GCTCTCGTGA CTGCCATCAC GGAGGCTCGC
CGCGCGGCGC CGTCAATTTT GTATCTCCCA GAAATTCGAC TTTGGTGGGA GAGTTCTACG
CCGACGCTGC GCGCGGCGTT GACGACGCTT CTTCGCGACA TCCCAGCGGA TCTCCCGGTG
ATGTTGATCA CCACGGCGGA CGTCGCCACC GTCGATGAAC TCGAGGAGAG TCTTCGCGCG
TCGTTCGCGT CCGTTCGCTG GAACCCCATC GCGATGCCAA CGACGTACGA CGATGCATCG
TTGACGAAAT TCTACCGCCC GCTTTGTGAT GCGGCTTTCA ATATTGCACA GAGACGAGAC
GTCGCGGCTT CCCGCGGCGA GCTCATCGAC GGCCGAGCAC CGGCTTCCGC GCTCAAACGA
GAAGTTCTCA CTCGAGCCCC TCGCCCGACT GAAGGCAGCG GTCGAGAGGC CGTCAAACGC
GGATCGCAAA AACTTTCTCA AGCCGCCATC GCGGCGGAGA ATCACCTGCT CCGTCAGCAG
CGCATGTTCT TGCGCGACGT CGTGACGAAG CTCTTGTACA AAAAGGCGTG GAACGTGCTC
GCGGCGCCGA TTAACGACGA CGAGTTGCCC GGGTATTCGC AACGCGTCAC CGATCCCATG
GACCTCTCTA CACTTCTTTG GAAAGTAGAT AGTGAGAAGT ACACGACGAT TGACGCCTTC
CTCAAGGATG CCAATCTCAT CACGAAGAGC GCTCACGAGT ATTGGGGCGA ACGCCCCGAG
TCAAACGACG GGAGGCAAAT GTTGAGCAAG GCCCACGCTT TAGAGGACAC CATAGCGCAA
ATGGTATCAG CGCTCGATCC TCAGCTCGTA ACGAGGTGCA ACGAGATCGA TCAGGCGCGA
AAGGAGCGCG AGGGCAAGAC GTCTGCGCAC GCTTCGCCGG CAGAGGCGGC GGCTGATTCC
GGCAGCGACA GAGACAGACC CACGAGAAAA CGAGACGAAG CCGCCAAGGG TGCGCCGGTT
TGGCAAAATC CCGATTTCGT CAAGGACCCT GAAGCGCTGG CAAGACAACT GAAGAGAAAG
GCTCGAGAAG AGGAGGAGCG CAAGAACGGC GCGGTAGACG AGAAAGCCGC CGACGATCCG
ACGCCGATGG AACAAGACGC CGCAGAGGAC GTCGTCGCGG CGCAACCTCC GACGCCAGTC
TCGAAACCCG GCCCGCCGGC GAAGGAAGAC GCGGAAGTGG AGAAGATCAA AACTTCCGCC
GTGGCCACGT TCGTTAAAGC GGCAAGGAAG AGCGGTTACG ACTTCACGCG GCTTGAATCG
TCGGCGAGCG ACATCGCTCG AGTCGCAAAC GACGCAGCGA GCAAAGTGTC GGAACGGGGT
TTGCGCGCGG ACGCGCTGAA GGAGGCGTTC GCGAAGCTTT ACGGTGAGGC GTAA
 
Protein sequence
MTRPRAASRS ARRSYAESEQ ASSEDDEHRA DDAEVDAEEK FESEEEEEPL KRRRRATTTT 
TTTYGTTMVR REKRRSSRQE NKPRKRYVDD DDDDEFVAEQ DDDDDDEFEE EDEEDFIEDE
SDDEPVRRST RARERVNRLS PTFKQRNDDD EEEELEDGEE ETDDDDIGDV ANKTYPKRTR
GPPPERFAPQ RPESGKDRSN SGRPGLFERR GTTWKDDRDK TSSRERSRRQ TSGRWIDDSE
DSDDGEFNLG AGAMDAFKAP PAYPLAGAGP SSAAPGPNVD AEITPVTVDP TLSFSSVGGL
DKYVDALKEM VFLPLLYPEV FARFKMSPPR GVLLYGAPGT GKTLIARALA ASCSRAGSEV
AFFMRKGADV LSKWVGESER QLRLLFEEAQ KRQPAIIFFD ELDGLAPVRS SKTDQIHNSL
VATLLALMDG LDNRGRVVVL GATNRVDSID GALRRPGRFD RELAFPLPGV KARGEILRIH
TKAWEQRPSE ALIDDLAAKC VGYCGADLKA LCTEAAVHAL RRRYPQIYES DERLSIDPKQ
VIPSRADFRA ALAAIVPASH RAARTHARPL TPLQKPLLEG VLEACLESIR KTFPPATFIT
LDGDGEAVGV NSGARQITDA VAEEEDEDIL AQAAVSDEAA GALPSESAAT AALEFMRRPP
CQRTALCIHG AETSGYNQLT SALLHALEQF PVHAIGMPSL LGDSGRSPEE ALVTAITEAR
RAAPSILYLP EIRLWWESST PTLRAALTTL LRDIPADLPV MLITTADVAT VDELEESLRA
SFASVRWNPI AMPTTYDDAS LTKFYRPLCD AAFNIAQRRD VAASRGELID GRAPASALKR
EVLTRAPRPT EGSGREAVKR GSQKLSQAAI AAENHLLRQQ RMFLRDVVTK LLYKKAWNVL
AAPINDDELP GYSQRVTDPM DLSTLLWKVD SEKYTTIDAF LKDANLITKS AHEYWGERPE
SNDGRQMLSK AHALEDTIAQ MVSALDPQLV TRCNEIDQAR KEREGKTSAH ASPAEAAADS
GSDRDRPTRK RDEAAKGAPV WQNPDFVKDP EALARQLKRK AREEEERKNG AVDEKAADDP
TPMEQDAAED VVAAQPPTPV SKPGPPAKED AEVEKIKTSA VATFVKAARK SGYDFTRLES
SASDIARVAN DAASKVSERG LRADALKEAF AKLYGEA