| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_88822 |
|---|
| Symbol | |
|---|
| ID | 5004877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009366 |
|---|
| Strand | + |
|---|
| Start bp | 391947 |
|---|
| End bp | 394271 |
|---|
| Gene Length | 2325 bp |
|---|
| Protein Length | 774 aa |
|---|
| Translation table | |
|---|
| GC content | 60% |
|---|
| IMG OID | 640420298 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001420678 |
|---|
| Protein GI | 145352705 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5028] Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.355252 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00889443 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTTG TGGAGGATTT CGCGTCTCTG AACCTCGGTC CGGGCGGTGG TCCCGGTGGG
GAGGCTGGAA TGGATCCCGC GACGTTTCCT CGACCGGGCG ACGACGAAGC GCGTCCGAAC
TTGGAGCTTT CGTGCGATCC CAAGTACATG CGTCTGACGT GCGGGGCGCT GCCGTCGAGC
CCGAGCTTGA AGACGAGGTT CGCCATGCCG CTGGGATGCA TCGTCCAGCC GCTCAGACCT
GGAGATGAGA CGACGGTGAA GACGGCGCAT TTCGGGAGCT CGGGTATCGT GCGATGCCGC
AGATGTCGAA CTTACATAAA CCCTTTCGTG CAATTCACAG ACGGCGGGCG GCGATTTAGG
TGCAACGTGT GCGCGCTGCC CAACGAAGTG CCGGTGGATT ACTTTTGCAC GCTCGACGCG
AACGGGGTGC GTCGAGACAT CGCCGAGCGC CCTGAGTTGA ACAGTGGAAC GGTTGAATTT
TTAGCGAGCC AAGAGTACAT GGTGCGACCG CCGATGCCGC CGTCCTACTT CTTCGCCTTG
GACGTGTCGC ACACGGCGGT GAATAGCGGC TTTTTGAAAC AAACGGTGGA GGTGATTCGG
GACTCCCTCG ACGTCATGTC GAAGAAGAGC GAGCGCACGC GGGTCGGATT CTTGACGTAC
GATTCGACGT TACACTTTTA TAGCCTGAAG GCGAATCAGT CTCAGCCGCA AATGATGGTA
GTCGCCGAGC TCGACGACCC GTTTTGTCCG ATGCCAGACG ACTTGCTGGT GAATCTCGCC
GAGTCGCGCG CGGTGATTGA TGCATTTTTA GACATGGTGT GCGATACGTA CGCGCAGACG
CAAAACATGG AAAGTGCCAT GGGCCCGGCG ATTCAAGCCG CGTTCTTAGC TATGTCTCAC
ATCGGTGGTA AGCTTCTCGT GTTCCAATCC TGCCTGCCCA CGCTCGGCGC GGGACGCATG
ATCAACCGCG ACGACACGCG AGCGAGCACG GATAGCACGA AGGAACACCT GCTTCGCGGC
CCGGTCGATG GTTTCTTCAA GAAGACCTCG GCAGAGTGCT CACGACATCA GATTTGTATC
GATTTGTACA CCATCGCGGC GCCGTTCTCT GATTTGGCCT CCATGGCGGT GTTGTGCAAG
TTCACCGGAG GCGAGTTGCG ACATTACCCC GGTTTTACGC CGGACAAGGA TGGGGTAAAG
TACGCAAAGG AGCTGAAAAA TAATCTCACG CGCTTCACCG CGTGGGAAGC CGTGTGTCGG
GTGCGATGCA GTCGAGGATT TAGAATCTGC GCCTTCAACG GGCACTTCTT CATTCGATCG
ATGGACTTGC TCGCGCTCCC GGCGACGGAT GGCGACAAGG CGTACGGCGT GCACATCGCG
CACGACGAAG TGGTTCCGAG CACGAACATT TCGTACTTGC AGTGTGCGCT ACTGTACACC
TCCGCAGAAG GAGAACGCAG AATCCGAGTG CACACGATGG CGGTTCCGGT GGTGACAGAC
ATAGCAGAGA TGTACCGCGC CGTGGACTGC GGCGCCATGG GCGCGTTCAT GGCGCGTTTG
GGCGCCGAGC GCACGCTCAC GGTGCGATTG CAAGATGCGC GCGAGGCGGT GATGACCAAG
GTTGTCGCCA CGTTGCGTGA GTTCAAGTTG CTCAACACGC AAGCGTCGAG AGCGTTCAAT
AGGCTCATCT TCCCCGAGAG CATGAAGTTA CTTCCGTTGT GGATCTTCGC CGCGAGCAAG
AGCACGGCGA TGCGAGGCGG CCCGCGAGAC GTCCCCGTCG ACGCGCGGAT CGCCGCTGTG
TACGACTTCA TGTCTGCCTC GACGGAAGAA ATCTTAAAGC TGCTGTATCC CACGATGCAC
GCCTTGCACA CGATGCCCGA GGAAGCGGGT ACGAAGGACG AATACGGCAG AGTGATTTTG
CCGCCGCGCA CCGTCCTCGC GGGCGAGCGC ATCGACGCTC GCGGCGCCTA CCTCGTCGAC
GACGGTCGTC GCCTGCTTTT ATGGCTCGGA AAGATGCTCG ACCCACAGTT CGTCGCCGCT
TTGTTCGGCC CTAGCGGTCC TCCGAGCGCG GATGTGGACT GCAACCTCCC TCATCTGGAC
ACCGACGTCT CGCGTCGCGC GCGCGCCGTC GTCGACGACA TACGCGCCGA GGCGTCCCGC
GCGCGTCATC TCGCCCTCAC CGTCGTCATC CAAGGCCATC CGAGTGAGAC GCAATTATTC
CCTTACCTCA TCGAAGATCG AGGCGCGGCC AACGTGCCCG GCGCGTCGTC CTACGGCGAG
TTCCTAGTGC AGCTTCACAG GCAAGTCTCC GCCGCGCAGC GGTGA
|
|---|
| Protein sequence | MNFVEDFASL NLGPGGGPGG EAGMDPATFP RPGDDEARPN LELSCDPKYM RLTCGALPSS
PSLKTRFAMP LGCIVQPLRP GDETTVKTAH FGSSGIVRCR RCRTYINPFV QFTDGGRRFR
CNVCALPNEV PVDYFCTLDA NGVRRDIAER PELNSGTVEF LASQEYMVRP PMPPSYFFAL
DVSHTAVNSG FLKQTVEVIR DSLDVMSKKS ERTRVGFLTY DSTLHFYSLK ANQSQPQMMV
VAELDDPFCP MPDDLLVNLA ESRAVIDAFL DMVCDTYAQT QNMESAMGPA IQAAFLAMSH
IGGKLLVFQS CLPTLGAGRM INRDDTRAST DSTKEHLLRG PVDGFFKKTS AECSRHQICI
DLYTIAAPFS DLASMAVLCK FTGGELRHYP GFTPDKDGVK YAKELKNNLT RFTAWEAVCR
VRCSRGFRIC AFNGHFFIRS MDLLALPATD GDKAYGVHIA HDEVVPSTNI SYLQCALLYT
SAEGERRIRV HTMAVPVVTD IAEMYRAVDC GAMGAFMARL GAERTLTVRL QDAREAVMTK
VVATLREFKL LNTQASRAFN RLIFPESMKL LPLWIFAASK STAMRGGPRD VPVDARIAAV
YDFMSASTEE ILKLLYPTMH ALHTMPEEAG TKDEYGRVIL PPRTVLAGER IDARGAYLVD
DGRRLLLWLG KMLDPQFVAA LFGPSGPPSA DVDCNLPHLD TDVSRRARAV VDDIRAEASR
ARHLALTVVI QGHPSETQLF PYLIEDRGAA NVPGASSYGE FLVQLHRQVS AAQR
|
|---|
| |