| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_26717 |
|---|
| Symbol | psbY |
|---|
| ID | 5004850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009366 |
|---|
| Strand | + |
|---|
| Start bp | 93144 |
|---|
| End bp | 94828 |
|---|
| Gene Length | 1685 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | |
|---|
| GC content | 63% |
|---|
| IMG OID | 640420271 |
|---|
| Product | possible psbY, PSII-Y, photosystem II polypeptide |
|---|
| Protein accession | XP_001420585 |
|---|
| Protein GI | 145352511 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.775264 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0834008 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | CGACGCGCGC GACACACCGC GCCGCACACG ATGCTCACGT TGACGCGCAC GCAAATCACG
CTCCCCGCCC GCGCGCCCGC GCGCGCGAGG CGCACGGCGC GCACGGCGCA AAGCGCGCGC
GTCATCGCGC GCGCGCGGAC GTCCGCGGTC GTCGAGGATG AATTCGCGAC GGACGACGAC
GTCGTCAGAC GAGGACAGGT GCGCGCGAAC GACCGCGGGC GCGATGCGCA AGAATTCGAT
GCGTCGCGCG GTAGGACGCG CGAACGCGCG CGGGCGTCGA TGGACGCGCG AGGGCGACGA
AGCGATCGAT CGGACGGGGG TGCGATCGAT ATCTGGATAA ATGGCGCGCG CTGGAAAACG
ACGCGTTCGG TCGAACGCTG ACGGCGATGC GACGCGTGAG GGCGGAGAAA GGGCGAAAGG
TAAAATGTGT GAACGAATGA CTGACGACGT GACGCGCGAT GCGGTGCTTT CGCGATCGTA
GACGGCGGCT ATGGCGACGG CGGCTTCCAT GTTTTTCGCG GATCGCGCCG ACGCGGCGCA
AGAGTTGATG CAAACCGCGC TCGATGGACG CCCGCTCATC TTCTTGGCGG TGTTTGGACC
GGTCTTGGGT TGGGTGGCGT ATAACATTCT CTCCCCGGGG TTGAGACAGC TTGAAAACAT
GCAAGCGGTG AACGCAAAGT CGAGCAAGAA GCGCGCCGCC GGCGCGCTGG CGGGCGGCTT
GACGGCGAGT GCCTTGATGG GCATGCCGGA AGCGTCTGAT GCGGCTCAAA ACGTTGCGGA
TCTTGCCGGC ATCGATGGCC GCATCGCCAT CTTTTTTGTG TTCGCCCCGG TTCTCGGCTG
GGTGGCGTAC AACATTCTCG GCCCGGGTCT TCGTCAGTTC GAAGACATGC AAAAGGCTGC
CGCGAAGAAG AAGGGTGTGC TCGCGGGTGC GGGTCTCTCG GCTGCCGCTT TGATGGGCAT
GCCGGAAGCC TCCGACGCTG CGGAACAGCT CGGTGAGCTC GCCGGCATCG ATGGCCGCAT
CGCCATCTTT TTTGTGTTCG CCCCGGTTCT CGGCTGGGTG GCGTACAACA TTCTCGGCCC
GGGTCTTCGT CAGTTCGAAG ACATGCAAAA GGCTGCCGCG AAGAAGAAGG GTGTGCTCGC
GGGTGCGGGT CTCTCGGCTG CCGCTTTGAT GGGCATGCCG GAAGCGTCTG ATGCGGCTCA
AGAAATTGGC ACCCTCGCTG GCATCGATGG CCGCATCGCC ATCTTTTTTG TGTTCGCCCC
GGTTCTCGGC TGGGTGGCGT ACAACATTCT CGGCCCGGGT CTTCGTCAGT TCGAAGACAT
GCAAAAGGCT GCCGCGAAGA AGAAGGGTGT GCTCGCGGGT GCGGGTCTCT CGGCTGCCGC
TTTGATGGGC ATGCCGGAAG CCTCCGACGC TGCGGAACAG CTCGGTGAGC TCGCCGGCAT
CGATGGCCGC ATCGCCATCT TTTTTGTGTT CGCCCCGGTT CTCGGCTGGG TGGCGTACAA
CATTCTCGGC CCGGGTCTTC GTCAGTTCGA AGACATGCAA AAGGCTGCCG CGAAGAAGAA
GTAGACATTT CGCAAGAGCT GCGTCAAGTC TCCGATTCAC GAACTCGACA ACAAACACAT
AGTATTTAGT CCTCCGAGAA CGTTGCGCTC TCGACAGAGC ATCGCTCGAA AATGCAAGCT
TGTAA
|
|---|
| Protein sequence | MLTLTRTQIT LPARAPARAR RTARTAQSAR VIARARTSAV VEDEFATDDD VVRRGQTAAM
ATAASMFFAD RADAAQELMQ TALDGRPLIF LAVFGPVLGW VAYNILSPGL RQLENMQAVN
AKSSKKRAAG ALAGGLTASA LMGMPEASDA AQNVADLAGI DGRIAIFFVF APVLGWVAYN
ILGPGLRQFE DMQKAAAKKK GVLAGAGLSA AALMGMPEAS DAAEQLGELA GIDGRIAIFF
VFAPVLGWVA YNILGPGLRQ FEDMQKAAAK KKGVLAGAGL SAAALMGMPE ASDAAQEIGT
LAGIDGRIAI FFVFAPVLGW VAYNILGPGL RQFEDMQKAA AKKKGVLAGA GLSAAALMGM
PEASDAAEQL GELAGIDGRI AIFFVFAPVL GWVAYNILGP GLRQFEDMQK AAAKKK
|
|---|
| |