| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_26707 |
|---|
| Symbol | psbM |
|---|
| ID | 5004845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009366 |
|---|
| Strand | - |
|---|
| Start bp | 76933 |
|---|
| End bp | 78152 |
|---|
| Gene Length | 1220 bp |
|---|
| Protein Length | 142 aa |
|---|
| Translation table | |
|---|
| GC content | 63% |
|---|
| IMG OID | 640420266 |
|---|
| Product | putative psbM, PSII-M, photosystem II polypeptide, typically encoded in the chloroplast genome |
|---|
| Protein accession | XP_001420746 |
|---|
| Protein GI | 145352847 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03038] photosystem II reaction center protein PsbM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 0.939468 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00710515 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | CGCCATGGCC GTCCTCGCGT TGAACACCGG ATTGATCCCG CTCGCGGCGC GCGCCGCGAC
GCGGCGAACC GCGACCAAGC GCGTCGTCGC GCCCAAGGTG CGACCGCGAC GCGACCGACG
CGACGACCGC GCGCGATCGC GACGAACGAC GCGATGACGA CGATCGACCG CGACGACGCG
CGACGAACGA ACGAACGACG GCGACGACGC GCGACGACGA CGATCGATCG CGCGCGCGCG
ACGACGCGCG GACCGTCGCG CGTCGGTAGC GACGTCGACG CGCGTGCGGG CGAACGCGCG
CGTCGAGGCA CGATCGATCG ATCGATCGGG GACGCGGACG GGGCGTATCT TTGCGCGCGG
GATTCGCGAT CGATCGTGGA TAATCGTATG GGGAAACAGT GAGGGGTGAC TGACGACGAA
GCACGCGCGC GAACGACAGG CGGCGACGAC GACGAAGGCG CAGCAAAAAG TGCGAACGAC
CGCGGTCGCG GCGACGCCGG CGGCGATCGC CGCGCCGGCG TTCGCGGCGA GCGAAGCGCT
CGAGCAAGTC GCGCTCGCGG ACGTGAACAT TTTGGGCGTC ATCGCGACGG CGCTCTTCAT
CATCATTCCG ACGGCGTTTT TGATCGTCTT GTACGTCAAG TCGTCGTCCG AGGGTAACGT
CTCGGGTGGT TTCTCGCAAG AGTACTACGA TAAGTCGAAG AAGCGAGGCG ACAAGAAGAC
GAACGAAGCC GCCGTGCTCA AGGGCAAGGG CTTGGGCATG CGCCCGGAGA AGTAAACGCT
CGGTCGAGAC GAAGCGCGTT TACGAGTCGC GTTCGTCAGC ACGAAGACGC ACTCCTGTTA
GGTCGCGGAA AATAGCGCGC GTGCTTCGTT TGACTTGAGA ATGAACGATC TAGATCGGAG
GAGGTGGATG TTTTTAAGAG GACGTACGCC GAGAATTTTT AATCAACGAG AAGCGCATCT
TTTTAGTCGA CGCGACGCGA CGCGCGGTTT GTCCGTCCTA AAGCGTTACT TACACGAGCT
ACATTTTCAA TACGTCGCGC CCGCGAGCGC GTCGCGCAAA GCGTTCCTTT GGTCGTCGCC
GAGCGATTTC GGGAAACGAA TGTGAAACTT GATCTTCAAG TCGCCGCGCT CGCCGGGGGA
CTTGCTCAGC GGCATGCCTT CGCCCGGCAA CACCTTGACG AAGGTCGGGG AGATGATGTC
GTCGACCTTG ACGTCCATCG
|
|---|
| Protein sequence | MAVLALNTGL IPLAARAATR RTATKRVVAP KAATTTKAQQ KVRTTAVAAT PAAIAAPAFA
ASEALEQVAL ADVNILGVIA TALFIIIPTA FLIVLYVKSS SEGNVSGGFS QEYYDKSKKR
GDKKTNEAAV LKGKGLGMRP EK
|
|---|
| |