| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_33510 |
|---|
| Symbol | HDA3504 |
|---|
| ID | 5003617 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009363 |
|---|
| Strand | + |
|---|
| Start bp | 333809 |
|---|
| End bp | 335927 |
|---|
| Gene Length | 2119 bp |
|---|
| Protein Length | 624 aa |
|---|
| Translation table | |
|---|
| GC content | 59% |
|---|
| IMG OID | 640419038 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001419561 |
|---|
| Protein GI | 145350325 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein
[COG0666] FOG: Ankyrin repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.000509548 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGAGAC GAGCGACGGA GGGGGGCGCG AGACGAGAGC CGTCGTGGCC GCCGAGCAAA
GCGGCGTTGA ATCGAATAGA TTCGCTCGGC GATTGCAGAA GCGCGCCGCG AGGAGTGGAC
GCGAAGAATG CGAACGGAGA CACCGCGCTG GCGGTGGCGT GCGCGCTGGA GGATGGGAAG
GCGTGCGAAG AGATGGTGAA GATTTTGGTG GACGCCGGCG CGGACGCGAG CGCGCTTTCA
AACGGAATGG CGCCGGTGCA CTGGGCGTGC GCGCTAGGGC ATCGCGACGC GCTCGCGTGC
ATGGTCGACG CGTCGTCGAC GTCAATCGTG AATCTTCGTG CCGAAGATGG GTCGACGCCG
TTGCTCGTGG CGGCGGAACA CGGTAAAATC GAAGTCATAC GATGGTTGCT CGAGCGCGGC
GACGTCGACG CGATGGCGAG AAACGCGCAT GGACGCGACG TACTCGGCGC GCTCGGCGCG
AAGATGCGTC GACAGAGTCA ATCGGCGAGG AGTGAGTTAC GTGCGGAGAT ATTTGAACTC
ATTCCTTCGC TGCGTTTGGC GTTTTTGTCC CATCCTGATT GCGAAGAACA CGTGTCGTTC
AAGCCACATC AAGAGAGCCC CGAGCGCATA GTCGCCATTC TCGCCGAGTT GCAGCGCGTG
ATCGACCGCG GTGAACTCGC AATGGGAGAG CTAGATAAGA CATGCACGTT CGGCGCCGCC
GAACCGTCGG ATATCCTCCG AGCGCACGAT GAGAATTACG TCCGCGTGTT GGCCGAACTC
AGCGATCGCG TCGGGCAAAC GCCCATCGCG TTCACGCCGT ACTGTCAAAA CCATAACGGC
GTGCCAGAAA AACTACAAAA ACCCGCGGAG AACAGTGACA CATTCTTTTC ACCGGGCACG
TTGCAAGCGG CGCTTAGAGC TGCGGGCGGG GTCATTCACG CCGTGGATAG AGTCTTGGAT
GGGAAGAATA GGAGCGCTTT CGTATGCTGT CGCCCGCCCG GTCATCACGC CGGGATCAAC
GGCGCCACGG AAGGCGCGCC GTCGAGCGGC TTTTCCATTT TGAACAACGC CATGATCGGT
ATGTGCGCAC TTTGCGCGAG CGACGCGAGC GATCGATTTT TCTTGAAACG GACGCACACG
CATAACCGCG GCGCTTCTAC GACACGCGTC GCGGACATGA TGCGCGTCCT ACATCGACGT
CCACTTTCAA TGACAGAGAG TTCTGAGCGT GGCTCTGCTG ACAGATACGG GTGGTACATT
TCGCGCGACT CGACTAACTG ACTGACGCTG ACGTTCACAA CGCAGGCGCT TTGCACGCCA
TCGACGTTCG CAAATGCATG CGGGTCGCCG TGGTTGATTT CGACGTGCAT CACGGGAACG
GCACCGAAGA AATCGCCAGG CATTGGCTCA CGAAGCAGCG CGCGAGAGAC GACTATCACC
GGCACAAATC TCCTGACTTG TTCTTCGCGT CGATTCACTT GGCGGATGAT GGAACGTCTT
CGGGCATGCT TCCATTCTAC CCGGGCAGCG GCGTGCAGGA TGATTTGATG AACAATATCG
TCAATGTCGT CGTCCCACCG ATGTGGCTCG CCAAGGGCGC AAGCGCCACG GCACACGCGG
AAACCGGCGA GCGCGCTCGG AAAAAAACAA AACGCTTCGC TGACTCTGAA GATGCCGCCG
CCGCGCCGCC GCCGAAGACC ATCGCCATTG AACCCGAGCA GCAACAAGGT GGGCGCCTAG
AGTGGATGAA GGCGTTTCGA GAGCGCTTGA TTCCCGCTCT CAGGGCGTTC GGTCCTGAGC
TCATAATCGT GTCCGCGGGA TTCGACGCGG CGGCTTCGGA CGTAGGAAAC TTGGGCGTCG
ATCCGCGTCG AAACACGAGG CACCAAGGCG CTAACCTTCG CGCTGAAGAC TACGAGGACA
TGACGAAGTT GCTCGTAAAC GTGTCGAACG TTTGCGATGG GCGAGTTGTA TCTATTTTAG
AAGGGGGCTA CGGACACTTG ATGAGCGTCG GAAAATCGAG CGACGGCGCG CAAAATGCGT
TGACGCTCGG TAGAGACGTC TTCGCCAAAT GCGTCAAAGC GCACGTCCAG GCGCTCATCT
GATGTTGTAC TTTTCACTC
|
|---|
| Protein sequence | MVRRATEGGA RREPSWPPSK AALNRIDSLG DCRSAPRGVD AKNANGDTAL AVACALEDGK
ACEEMVKILV DAGADASALS NGMAPVHWAC ALGHRDALAC MVDASSTSIV NLRAEDGSTP
LLVAAEHGKI EVIRWLLERG DVDAMARNAH GRDVLGALGA KMRRQSQSAR SELRAEIFEL
IPSLRLAFLS HPDCEEHVSF KPHQESPERI VAILAELQRV IDRGELAMGE LDKTCTFGAA
EPSDILRAHD ENYVRVLAEL SDRVGQTPIA FTPYCQNHNG VPEKLQKPAE NSDTFFSPGT
LQAALRAAGG VIHAVDRVLD GKNRSAFVCC RPPGHHAGIN GATEGAPSSG FSILNNAMIG
ALHAIDVRKC MRVAVVDFDV HHGNGTEEIA RHWLTKQRAR DDYHRHKSPD LFFASIHLAD
DGTSSGMLPF YPGSGVQDDL MNNIVNVVVP PMWLAKGASA TAHAETGERA RKKTKRFADS
EDAAAAPPPK TIAIEPEQQQ GGRLEWMKAF RERLIPALRA FGPELIIVSA GFDAAASDVG
NLGVDPRRNT RHQGANLRAE DYEDMTKLLV NVSNVCDGRV VSILEGGYGH LMSVGKSSDG
AQNALTLGRD VFAKCVKAHV QALI
|
|---|
| |