| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_12863 |
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| Symbol | HDS |
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| ID | 5003594 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ostreococcus lucimarinus CCE9901 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009363 |
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| Strand | + |
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| Start bp | 137320 |
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| End bp | 139362 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | |
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| GC content | 58% |
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| IMG OID | 640419015 |
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| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, putative chloroplast precursor (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) (ISPG) |
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| Protein accession | XP_001419500 |
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| Protein GI | 145350194 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.00611793 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGAAC GAGGCGTGCT GATGCCGACG GGGAAGTACT GCGTGAATCA CGCGGAGACG
GTGCGAAGGA AGACGCGCAC GGTGCACGTG GGCAACGTGA AGATTGGCTC GGAGCACCCA
ATCGTGAAGC AGACGATGAC GACGAGCGAC ACGAGAGACG TCGAGAAGAC GGTGGCGGAG
GTGATTCGAT GCGCCGATGC CGGTGCGGAG ATGGTGCGGA TCACGGTTCA GGGGATGCAA
GAGGCGAAGG CGTGCAAGAT CATCAAGGAG ACGCTCGTGG CGAAGGGATA CGATACGCCG
CTCATCGCGG ATATCCACTT CGCGCCGAAG GTGGCGATGA TGGTGGCTGA ATGCTTCGAT
AAGATTCGCG TGAACCCCGG TAACTTTGCG GATGGTCGTA AGACGTTTGA AAACATCCTG
TACGAAACGG ATGAAGAGTA CAACGCCGAA CTCGCGGAGA TTGAAGAAAT CTTCACGCCG
CTCGTGTTGA AGTGCAAGGA GCGAGGCGTG GCGATGCGCA TCGGTACGAA CCACGGTTCT
TTGTCCGCGC GCACGTTGTC GCGCTTTGGT GACACGCCGA TGGGGATGGT GGAATCTGCG
TTCGAATTCG CGCGCATTTG CCGCAAGCAC GATTACCACA ACTTTGTCTT CTCCATGAAG
GCGTCTAACC CTCTCGTCAT GGTGCAAGCG TATCGCCTGT TGTCCCACGA GATGTACAAG
CTCGGCTGGG ACTACCCGCT TCACCTCGGC GTCACCGAAG CCGGCGAAGG CGAAGACGGT
CGCATGAAGT CTTCCATCGG TATCGGTGCT CTCTTACTTG ACGGTCTCGG AGACACCATT
CGCGTGTCTC TCACCGAAGC ATCCGAGCTC GAAATCGAGC CGTGCACGCG CTTGGCCAAC
CTCGGTATGA AGGCGTGCGC CGAAAACATC GGTGTCGAGC AATTCGAGGA CTCTGTCCGT
GACTTCAAGA CCTTCACGCG CAGAACTGGT GATTTGCCCG AACAAAAGGA CTCTGATGCG
ATTGATTTCC GGAACATTCT CCACCGCGAC GGCTCTGTGC TCGCCGCCGT CACCACGGCG
CAACTCGCGT CGGAAGATGG CTTCTACCGC GAATTGGGCG CCAAGCTTGC GGTCGGTATG
CCGCTTCGTG ATATCGCCAC CTGTGATTCC ATCTTGCTCA GCGAAGTTCC CGCCGCGTCC
GAAGAGAAGG CGCTCCGATC TATCCGTCGC CTCCAAGAAA TCGGCTGCGG CGTTGTCGTG
CCGGCTGACC TTCTCCGAGC GACGCCGTTG GAGAACGCCA TCGCCCTCGT CAGCGCCGAC
GAAGTCGGTG CTCCGTTGCC GGCCGGTGCC GCGCGAAAGG CTGTCACGTT GAACGGCTTC
GAGACCGTCG AACAACTCAA GGCTGTCGCA GCGTCTGACG CCGTCATGGT GCTCATCAAG
ACGAAGGATG GCGAGTCTCG TCTCCACTCT TCTCGCCGCA TCGCCGAAGT GATGGCGCAA
GTCGGTGCGA AGATGCCGGT CATTCATCAC ATGTACATGC CGACCGGCGA CAAGTCGGAC
ATCGTCATTC AATCCGGCTC CCAAGTCGGT GGTTTGCTCG TCGACGGCTT TGGCGACGGC
GTGTTGATCC AATACGCCGG CTCCGACAAG GATGTCTCAT TGGACTTCCT TCGTACGACC
TCGTTCGGTT TGCTCCAAGG CTCTCGTATG CGTAACACGA AGACGGAGTA CGTCTCTTGC
CCGTCGTGCG GACGCACCCT CTTCGACTTG CAAGAAGTCA CGGCGCAAAT CCAAGAGAAG
ACTGGACACT TGCCTGGCGT CGCCATCGCC GTTATGGGTT GCATCGTCAA CGGTCCGGGT
GAGATGGCGG ATGCGGATTT CGGTTATGTT GGTGGTGCTC CGGGTAAGAT TGACTTGTAC
GTCGGTAAGG AAGTCGTCAA GCGAGGTATC GCGATGGAAA CTGCGTGTGA TGAACTCATT
CAACTCATCA AGGACAACGA CCGCTGGATC GAAAAAGAAG TCGAGGAAGC CGTCGCCGCG
TGA
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| Protein sequence | MDERGVLMPT GKYCVNHAET VRRKTRTVHV GNVKIGSEHP IVKQTMTTSD TRDVEKTVAE
VIRCADAGAE MVRITVQGMQ EAKACKIIKE TLVAKGYDTP LIADIHFAPK VAMMVAECFD
KIRVNPGNFA DGRKTFENIL YETDEEYNAE LAEIEEIFTP LVLKCKERGV AMRIGTNHGS
LSARTLSRFG DTPMGMVESA FEFARICRKH DYHNFVFSMK ASNPLVMVQA YRLLSHEMYK
LGWDYPLHLG VTEAGEGEDG RMKSSIGIGA LLLDGLGDTI RVSLTEASEL EIEPCTRLAN
LGMKACAENI GVEQFEDSVR DFKTFTRRTG DLPEQKDSDA IDFRNILHRD GSVLAAVTTA
QLASEDGFYR ELGAKLAVGM PLRDIATCDS ILLSEVPAAS EEKALRSIRR LQEIGCGVVV
PADLLRATPL ENAIALVSAD EVGAPLPAGA ARKAVTLNGF ETVEQLKAVA ASDAVMVLIK
TKDGESRLHS SRRIAEVMAQ VGAKMPVIHH MYMPTGDKSD IVIQSGSQVG GLLVDGFGDG
VLIQYAGSDK DVSLDFLRTT SFGLLQGSRM RNTKTEYVSC PSCGRTLFDL QEVTAQIQEK
TGHLPGVAIA VMGCIVNGPG EMADADFGYV GGAPGKIDLY VGKEVVKRGI AMETACDELI
QLIKDNDRWI EKEVEEAVAA
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