Gene OSTLU_87576 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagOSTLU_87576 
SymbolGTA3501 
ID5002484 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameOstreococcus lucimarinus CCE9901 
KingdomEukaryota 
Replicon accessionNC_009360 
Strand
Start bp557529 
End bp560345 
Gene Length2817 bp 
Protein Length938 aa 
Translation table 
GC content58% 
IMG OID640417905 
Productpredicted protein 
Protein accessionXP_001418275 
Protein GI145347649 
COG category[K] Transcription 
COG ID[COG5164] Transcription elongation factor 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.571615 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACACGC GTCTGCACGC GCGGATGGAG AATCAAGGAC AGTTTGAACG CATGGAGAAC 
GAGGAGGAGT TGGAGCGCAT GATCAAGGAG CGGTACGCGG CGCCGAGGTA CGAAGCGGGG
ACGGGGCAGT TGGACGCCAA CGTCGATCAG CAGGCGCTGC ATCCGACGGT GCGTGATCCC
AAGCTTTGGC TTGTCACGGT GAAGCTCGGG AAAGAGCGCG AGACCGTCGT GTGCTTGATG
CAAAAGACGA TCAACCTGGC CAAGCAAGGG AAACCCCCCA TGCAAATCTT GTCGTGCATC
GCGCAGGATC ACCTCAAGGG ATACATCTAC GTCGAAGCCG AGCGTGAAGA TCATGTGCGA
AAAGCGTTAC AAGGAATGAG ACACGTGTAC CACGGTAAAC CTGTTCGATT GGTGCCGATT
AACGAAATGG TCGACTCGAT CAGCGTCACA ACAAAGGAAG TCTCCGTGGT CAAGGTGGAT
TCGTGGGTTC GCATGCGCAC CGGCGTGTAC AAGGGAGACT TGGCGCAGGT CGTCGACGTG
AACTACGCCG ATAACCAGTG TACGGTCAAA TTGGTCCCGC GCATAGACTA CCAGCACCTC
GCCGATAAGG AATCAGGCAA GGCGAAGGGC AAGACAAAAT CTCAAGTCCG CCCACCAGCG
CGTCTTTTCG CGGAAGCCGA AGCCAAGCGA TTGAATTTGT CTTTCGAAAG AGGCCGATAC
GATCGCAGCT TGGGTGCGAG CGTGGACGTA TTGTGCAGCA CGACGAAGCT CTTGGATGGG
TATCACATGA AGACGTGCTC TTTAGCCACA GTCAAGCTCG CCGATGCGCC GACGTTGGAT
GAACTTCAAA AGTTCGCCAT CGGTGACGAC GAGGACGGTG AGAAGGGCGG TAACTCCAGC
GGCGCGTTGG CCGCGCTGTC CAAAGCCGTC GGTACTCGCA AGACTGATTT GAAGTTCATG
CCGGGCGACC AAGTAATCAT CGTCGAGGGC GATTTGAGAA ACCTTGAGGG CGTCGTCGAG
CGAATCGACC CCGACGGACG CGTCGTCGTC AATCCGTCGC ATAAAGAGCT GAACGAGTTA
CTGACGTTCA AGTCCGAACA ACTGCGAAAG CACTTCAAGA CTGGTTCCAC TGTGCGCGTG
TTGCACGGAA AGCACGAGGG CGTGGTCGGT ATGGTGGTGA AGGTGGAACG CGACGTAGCG
CACATCTTCT CGACGGTGAG TAACGAAGAG TTCCAAGTCT TCATGCACGA TCTTGCCGAT
AGCGAAGAAA CCACGCAGCG TATCGACACG ATTGGTGAGT ACGCTTTGCA TGATTTGGCG
ATGCTCGAAG GCTCTGAAGT CGGTTGCATC ATTCGTGTCG AGAAGGATGT CGCCTTCGTC
ATGACCAATG CCGGCACCCC AGACCGACCC GAGATCAGGC CCGTAAAGCT TCATGAGTTG
AAAAAGAAGC TGCTGAGTAG GAACATTTCC GCACAAGACG CTCACATGGA CACCATCGAT
CAAGGGTCGA TGGTTCGCAT CATAGACGGC AAGTACAAGG ACACCACGGG TACGGTAGAG
CACATCTTCA AGGGTACGCT CTGGATTCGA GCTCGGCACG TACAAGAACA CGGCGGTATC
GTTTGCATTC GCGCTCGAAA TTGCGTGGCA CACGGCGGTA ACAAGGGTTC CCAAATTGGT
GGTGGTCTGG CTGCCCAAAT GATGGGCGCG CATGGCATGC CGCCGAAGTC TCCAGGTCAT
GCTCTCTTGC AGAGTTCGTA CACTTCTGGT TTGCGTGGTG ATTTGATGTC TCAAAGTCTT
CAAGCTCCGA GAGCTGCACC ACCACGTGCT TTTGGTGGAC CTGGTCGCCG CGGCCAGGAT
CCGCTCATCG GTCAAACGAA GAAGGTTCGC GCTGGTGTGT ACAAGGGATA CATCGGACGC
ATCGTCGACG TCACCGACAC GTCCGTCCGT CTCGAGCTTC AAGCGCAGGC ACGCACTGTT
ACGGTCAATC GCGAGCACTT AGACGTCCCA CAAGTTGCCC CGAGTCGTGA CTCTTTCTTG
GCTCCTCGCG CGACGAGCAT GTACGATGCT CCTGGCTCGA GAACTCCGGC GCACTACCCG
ATGACACCGG CTCACGGCGG CGGTATGACG CCAATGCACG GCGGTATGAC GCCCGCGCGC
GAGGCCGCTT GGAACCCCAC CGCGACACCG GCGCACATCC AGGACAACTG GGAGCCGACG
TCTACTGCAG GCACCGGGTG GGGTGCTGGA AATGTCGGTT ACACGCCAGG CGGGTACGGC
GACTCCAGCG CCCTGGCGGG TCCGACACCG AACGCATACG GCGTCGGCGC CACGCCAGGT
GCCGCCTACG GTCAAACGCC CGGTGGATAC GGTCAAACGC CTGGTGGGTA CGAAGCAGAT
GAATACGTCG CCCCACCGGC GGCAGCGTCG TGGCCGGAAG ATTACAAGGG TCGTTTCCTA
CCGGGTGTCG TCGTGCGTTT GACGAGTGGC GCGCAAGGTT ACATCACCTC TGTCGCGCCG
GCGGGTTCTA GTTTCAAGGT GAAAATCGGT ACCTCGCGCC CGCGTGACGG TGTGGAGGTC
TTAGAGACCG TGCCGAAGTC AGCACCCGAA GAGACCGTCA CAGAACAAGA GCTCGAGATC
GTGCGACCGG GAAAGAAGAC GTCAGTCATC ATCGTCACCG ATTCTGGAGA CGCGTCCCGC
GGCGACACCG GCGAGCTCAT CACCATCGAT GGTGTCGACG GTGTCGTGCG TTTAAGTAGC
ACGAATGACG TCGTACTCTT AGACATGTCG TGCCTGGCTC GTCGCTGGGT CGAATAA
 
Protein sequence
MDTRLHARME NQGQFERMEN EEELERMIKE RYAAPRYEAG TGQLDANVDQ QALHPTVRDP 
KLWLVTVKLG KERETVVCLM QKTINLAKQG KPPMQILSCI AQDHLKGYIY VEAEREDHVR
KALQGMRHVY HGKPVRLVPI NEMVDSISVT TKEVSVVKVD SWVRMRTGVY KGDLAQVVDV
NYADNQCTVK LVPRIDYQHL ADKESGKAKG KTKSQVRPPA RLFAEAEAKR LNLSFERGRY
DRSLGASVDV LCSTTKLLDG YHMKTCSLAT VKLADAPTLD ELQKFAIGDD EDGEKGGNSS
GALAALSKAV GTRKTDLKFM PGDQVIIVEG DLRNLEGVVE RIDPDGRVVV NPSHKELNEL
LTFKSEQLRK HFKTGSTVRV LHGKHEGVVG MVVKVERDVA HIFSTVSNEE FQVFMHDLAD
SEETTQRIDT IGEYALHDLA MLEGSEVGCI IRVEKDVAFV MTNAGTPDRP EIRPVKLHEL
KKKLLSRNIS AQDAHMDTID QGSMVRIIDG KYKDTTGTVE HIFKGTLWIR ARHVQEHGGI
VCIRARNCVA HGGNKGSQIG GGLAAQMMGA HGMPPKSPGH ALLQSSYTSG LRGDLMSQSL
QAPRAAPPRA FGGPGRRGQD PLIGQTKKVR AGVYKGYIGR IVDVTDTSVR LELQAQARTV
TVNREHLDVP QVAPSRDSFL APRATSMYDA PGSRTPAHYP MTPAHGGGMT PMHGGMTPAR
EAAWNPTATP AHIQDNWEPT STAGTGWGAG NVGYTPGGYG DSSALAGPTP NAYGVGATPG
AAYGQTPGGY GQTPGGYEAD EYVAPPAAAS WPEDYKGRFL PGVVVRLTSG AQGYITSVAP
AGSSFKVKIG TSRPRDGVEV LETVPKSAPE ETVTEQELEI VRPGKKTSVI IVTDSGDASR
GDTGELITID GVDGVVRLSS TNDVVLLDMS CLARRWVE