| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_41331 |
|---|
| Symbol | |
|---|
| ID | 5002464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009360 |
|---|
| Strand | - |
|---|
| Start bp | 168648 |
|---|
| End bp | 169682 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | |
|---|
| GC content | 56% |
|---|
| IMG OID | 640417885 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001418397 |
|---|
| Protein GI | 145347899 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.060749 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0231462 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAGC AGTTGACGCG CACGAGCAAG CGCCTGGCGA CGGATTCCAT GCGATCGTAT
CTCAAGGATA TCGGTTCCGT CACGCTCTTA AACGCCGGTC AAGAGGTCGA ACTCGCCAAG
CGCATTCAAG ATTTGATGCA TTTGGAGAGC ATTCGCGAAA ACCTCGTCGA GGAGACGGGT
CCTGGCGCCG AAGTCACCGA CTACCAGTGG GCGTCGGCGG CGGGTTTAAA CGTGCAGGCG
CTCCATCAGC GTTTGCGCGA CGGTAAGTCG GCGAAGAACG AGATGATTCA AGCCAACTTG
CGCTTAGTGG TCTCCATCGC GAAGAAGTAC GCCAACAGTA ACATGAGCTT CCAGGATTTA
ATCCAAGAAG GGTGCGTCGG TTTGATTCGC GGGGCGGAGA AGTTTGATTT CCAACGCGGG
TACAAGTTTA GTACGTACGC GCACTGGTGG ATTCGCCAGG CGGTGACGCG TTCGATTAGC
GACCAAAGTC GCACGATTCG CTTGCCCGTG CACTTGTTTG AAATCATCTC CCGCATCTCG
AAGATGGAGC AAAAGTTTGC GTTGCATAAC GGTCGCAACC CGACGACGGA GGAAATCGCC
GCAGAGATGG ATATGTCGGC GGAGAAGATT ACTCAGATTA AAAAGGCTGC GCAAGCGCCC
GTGTCGCTGG CTCAGACCAT GGGTGGAGAT AACAAAGGAC GCACCGTCGA AGACACCCTC
GTGGACGTCA CCGCGGAGGG CCCAGAGAAG GTGAGCGGCA AGTCCCTGTT GAAGGAGGAT
TTGGAAAACG TACTGAACAC GCTCAATCCG CGCGAGCGGG ACGTGTTGCG ACTTCGGTAC
GGATTAGATG ACGGTCGCGT GAAGACCCTT GAAGAGATCG GGACGGTGTT CTCCGTCACT
CGCGAGCGCA TTCGACAAAT CGAAGCCAAG GCTCTTCGAA AGTTGAAGCA ACCGTCGAGG
AATTCGATTT TGCAAGAGTA CTTCGCCGAC AGCGACGCGT CCTCGTTACC GAAGCCGCCG
CCGATGAACC CGTAG
|
|---|
| Protein sequence | MSKQLTRTSK RLATDSMRSY LKDIGSVTLL NAGQEVELAK RIQDLMHLES IRENLVEETG
PGAEVTDYQW ASAAGLNVQA LHQRLRDGKS AKNEMIQANL RLVVSIAKKY ANSNMSFQDL
IQEGCVGLIR GAEKFDFQRG YKFSTYAHWW IRQAVTRSIS DQSRTIRLPV HLFEIISRIS
KMEQKFALHN GRNPTTEEIA AEMDMSAEKI TQIKKAAQAP VSLAQTMGGD NKGRTVEDTL
VDVTAEGPEK VSGKSLLKED LENVLNTLNP RERDVLRLRY GLDDGRVKTL EEIGTVFSVT
RERIRQIEAK ALRKLKQPSR NSILQEYFAD SDASSLPKPP PMNP
|
|---|
| |