| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_31144 |
|---|
| Symbol | |
|---|
| ID | 5001391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009358 |
|---|
| Strand | - |
|---|
| Start bp | 378705 |
|---|
| End bp | 380215 |
|---|
| Gene Length | 1511 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | |
|---|
| GC content | 58% |
|---|
| IMG OID | 640416812 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001417488 |
|---|
| Protein GI | 145346006 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR01559] farnesyl-diphosphate farnesyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 62 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TCGACGGGTC GTCCGGCGTC GAGTCGACGC GATCGATCGC GCGCGTCGCG ACGAACGATT
CGAACGCGGA TCGATCGTCC GACGACCCGG TCGCGGATTC GGTCGCGAGA CGCGCGACGC
GACGGATGGG GGCGCTTCGG GCGGTGCTGT CGCACCCGGG GGACGTCGCG CCGCTGGTGC
GGGTGAAGAT GATGGCGAAC GCGGCGAAGA GATTGCCGAA GGATCCGGAT CTGGCGTACT
GCTACGACGT GCTGAATAAG GTGTCGAGAT CGTTCGCGAT CGTGATTCAG CGGCTGGACG
CGGAGCTGCG AGACGCGGTG TGCGTGTTTT ATCTCGTGCT TCGAGCGCTG GACACGGTGG
AGGACGACAT GAGCATACCG ATCGAGAGGA AGGTGCCGGA TCTGCTCGCG TTTCACGAGT
ACATTTACGA CGCGAATTAT AGCGCGGATT GCGGGGAGAA GCACTACAAG GATTTGATGA
AGAATTATCC GCGCGTGACG TCGGTGTTCT TGGGATTGAA GAAGGAGTAT CGAACGGTGA
TCGCGGACAT CACCAAGCGA ATGGGGCACG GGATGGCGAA GTTTATCGAG AAGGAGGTGA
TGGACATGGC GGATTTCGAC GAGTATTGCC ACTACGTCGC GGGCTTGGTC GGCATCGGTC
TGTCCAACTT GTGGGGGGTG TCGAAGATGG AGAGCGCGGA GTTTGTGGGC GAGGAAAAGC
TCTCGAACGC CATGGGATTG TTTTTACAGA AGACGAACAT CATTCGCGAT TACTTGGAAG
ACATTCAGGA GCTTCCCGCG CCGCGAATGT TCTGGCCTAG GAGCGTGTGG AGCAAGTACG
CCGAAGAGCT CGACGATTTG CAACACGAGG AAAACCGCGA AAAGGCGGTG CAGTGCATGA
ACGAATTGAT CACCAACGCC CTGTCGCACT CGTTGGATTG CTTAAAGTAC ATGAGCCGAG
TCAAGGAGAT CTCCATCTTC CGGTTCTGCG CCATTCCTCA GGTGATGGCC ATCGCGACGT
TGGCCGAGTG CTACGGCAAC GAAAACGTCT TCAAGGGCGT GGTCAAGATT CGCCGAGGCC
TGAGCGCGCG CATCATGCTC AAGTGCAACA ACATGCTCGA GTTAGCGAGC GGCTTCAAGC
ACTTCGCCAA CGAACTCGTG CACAAGGTGG ACCCGAAGAG CGATCCGAAC GGCGAGGAGA
CCATGGCGCG CATCGAGGCT CTCGAGGAGG CGTGCGACGA AATCATCGCC AAGGAAACCG
AACGCATGCG CAAGGAGCAA ATAGAGGACG ACTCCATTCC CATGGCGACC AGAATCGTCC
TGTGGTTGTT GTGTTTCGGC TACTTTTTGT ACGCCTGGAA TCTCGAAAAC GTTCGCGAGT
CGCTCGGCGT CAACAGACAC GCCGGCGATC CTCTCGTCGA CGACGCCCAA AAAGTCTTGG
CGACGATTTG CATCATCTCC ACGACCGCGC TCGTGATGGC GGGTAAAAAG AGATGATTTC
GGTTCGCGGC G
|
|---|
| Protein sequence | MGALRAVLSH PGDVAPLVRV KMMANAAKRL PKDPDLAYCY DVLNKVSRSF AIVIQRLDAE
LRDAVCVFYL VLRALDTVED DMSIPIERKV PDLLAFHEYI YDANYSADCG EKHYKDLMKN
YPRVTSVFLG LKKEYRTVIA DITKRMGHGM AKFIEKEVMD MADFDEYCHY VAGLVGIGLS
NLWGVSKMES AEFVGEEKLS NAMGLFLQKT NIIRDYLEDI QELPAPRMFW PRSVWSKYAE
ELDDLQHEEN REKAVQCMNE LITNALSHSL DCLKYMSRVK EISIFRFCAI PQVMAIATLA
ECYGNENVFK GVVKIRRGLS ARIMLKCNNM LELASGFKHF ANELVHKVDP KSDPNGEETM
ARIEALEEAC DEIIAKETER MRKEQIEDDS IPMATRIVLW LLCFGYFLYA WNLENVRESL
GVNRHAGDPL VDDAQKVLAT ICIISTTALV MAGKKR
|
|---|
| |