| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_119525 |
|---|
| Symbol | YchF |
|---|
| ID | 5000127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009356 |
|---|
| Strand | + |
|---|
| Start bp | 485765 |
|---|
| End bp | 487024 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | 640415548 |
|---|
| Product | Nucleic acid binding GTPase, translation factor, putative |
|---|
| Protein accession | XP_001416160 |
|---|
| Protein GI | 145342229 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0012] Predicted GTPase, probable translation factor |
|---|
| TIGRFAM ID | [TIGR00092] GTP-binding protein YchF
[TIGR00231] small GTP-binding protein domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.832953 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGCAC AGAAGTTCGC ACATACAACG TTGAGAAGTT CGGTGGCGCT TCGAGGTGAC
GGCTGGTTCT TAAGCGGCAA GTTAACCCTT CGTACGAAAA GTTTTGGCCC TGCACGCTCA
CGCACTTTGC ACTCAAACTG CCGAGCATCC CTAAAAACTG GTATAGTTGG ACTTCCCAAC
GTCGGCAAGA GTACACTTTT CAACGCATTG GTCGAGAACA GTCGAGCGCA GGCAGCTAAC
TTCCCCTTTT GTACAATCGA GCCTAACTTT GGGACTGTGC CGGTGTTGGA CGGCCGCCTA
GATGTTTTGG CCCGGATATC AGGAACGAAA AATATTGTGC CAACTGCGGT CGAGATCGTC
GACATCGCCG GACTCGTGGA AGGAGCGTCA GAAGGCCAAG GTTTGGGTAA CAAATTCCTT
GCAAACATTC GCGAGTGCGA CGCCATCATT CACGTCGTGC GTTGTTTTGA TGATGATAAC
ATTGTTCACG TGAACGGAAG TGTTGATCCG AAGAGAGATG CAGCAATCAT AAATTCAGAG
CTTGCATTGT CTGATATGAG CCAGATTCAA AAACGCATAG ATAAAGTGCG TAAAAGTAAA
GGCAAGGTGC ACATCGATGG GCAGACGGCT GAAACTGAGA TTGAAATACT TTCAAACATT
CTTACGCAGC TTGAAGACGG TAAACAAGTA AGACAACTCA AACTTAACGA AGACGAACTT
TTCGTAATTA AAGAACTCAA TCTCTTGACG GCAAAACCTT GTATATATGC TGCCAACCTA
CCAGAAGGTG ATCTTCCAAC AAATGGGGCT ACTAACGTCC ATTTCCAGGC CTTATCCAAG
CTTGCGACCG ACTCAGAAGC TGGACTTTGC GCTGTTTCGG CACAGGTTGC CGCAGAGTTG
AAAGATTTAA CGCAAGAAGA GCGCGATGAC TTTCTTTCTT GCATCGGAGT GGAGAGTGAT
GGCACAAAAG AACTAATTGA AGTCGCGTAT AGGCAACTCA ACTTGCTGAC ATATTTTACA
ACAGGCGAAA AAGAAACGCG CGCGTGGACG ATAAAGAGAG GCTTTACGGC TCCACAAGCA
GCAGCTGTAA TACATACAGA TTTCGAAAAA GGGTTCATAA AGGCTGAGAC GGTTCATTAT
GATGACTTTG TGACAAGTGG AGGATTTGCA GGGGCCAAAG AAAAGGGAGT TTGGCAACTG
GAAGGCAAAG ACTACGTTGT TCAGGAAGGT GATGTGATAG TTTTCAAGGT CAACGCATAG
|
|---|
| Protein sequence | MLAQKFAHTT LRSSVALRGD GWFLSGKLTL RTKSFGPARS RTLHSNCRAS LKTGIVGLPN
VGKSTLFNAL VENSRAQAAN FPFCTIEPNF GTVPVLDGRL DVLARISGTK NIVPTAVEIV
DIAGLVEGAS EGQGLGNKFL ANIRECDAII HVVRCFDDDN IVHVNGSVDP KRDAAIINSE
LALSDMSQIQ KRIDKVRKSK GKVHIDGQTA ETEIEILSNI LTQLEDGKQV RQLKLNEDEL
FVIKELNLLT AKPCIYAANL PEGDLPTNGA TNVHFQALSK LATDSEAGLC AVSAQVAAEL
KDLTQEERDD FLSCIGVESD GTKELIEVAY RQLNLLTYFT TGEKETRAWT IKRGFTAPQA
AAVIHTDFEK GFIKAETVHY DDFVTSGGFA GAKEKGVWQL EGKDYVVQEG DVIVFKVNA
|
|---|
| |