| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_119518 |
|---|
| Symbol | Hda |
|---|
| ID | 5000433 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009356 |
|---|
| Strand | - |
|---|
| Start bp | 473456 |
|---|
| End bp | 474730 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | 640415854 |
|---|
| Product | histone deacetylase, probable |
|---|
| Protein accession | XP_001416403 |
|---|
| Protein GI | 145343595 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGCCA AGGAAAGGGT GTGCTACTAC TATGACGAAG AAGTTGGTAG AAACTACTAC
GGGCCGAACC ACCCCATGAA GCCTCATCGC TTGTGCATGA CGCACAATTT GATTTTGGCC
TATGATTTGC ATAAACACCT GCAAGTTTTC AGGCCACGAG CCTGCACGAA CACAGAATTC
ACTCAGTTTC ATAGCGAAGA TTACGTCGAT TTCTTGTCAA AAATAACTCC TGACAAGCAG
CAACAATACG TTTTAGAAAT GCAAAGATTC AACCTTGGCG AAGACTGCCC CATTTTCGAT
CACATGCTTG ACTTTTGTCG ACGGTACACA GGTGGGTCCA TTGACGGAGT CCGGCGATTG
AATCAGGGGG TATCAGACAT TGCCATAAAC TGGTCTGGAG GTTTACACCA TGCAAAGAAG
GCAGAAGCTT CGGGATTTTG CTACATCAAC GACCTCGTGT TAGCGATACT AGAACTCCTG
AAGCAACATG CACGGGTCGT GTACATAGAT ATAGATATTC ATCACGGTGA CGGAGTGGAA
GAAGCATTTT ACATGACTGA TCGAGTGATG ACCGTCAGTT TTCATAAATA TGGCGATATG
TTCTTCCCGG GCACAGGTGG TTTGAGGGAC ATCGGCATAA ACTCGGGAAA ATACTACAGT
GTCAATGTGC CCTTGAATGA TGGCATAGAT GACAAAAGCT TTGTGGATCT ATTCAAATTT
GTCATGCAAG ACGTGATGGA TTCATTCCAA CCAGGCGCCA TCGTCCTCCA ATGCGGCGCT
GATTCACTAG CTGGCGATCG AATCGGTTGC TTTAACCTTT CACTGAAAGG TCACGCAGAA
TGTGTTTCCT TCATGAAAAG TTTTGCGAAG CCGATACTTG TTACAGGTGG CGGAGGCTAT
ACGAAATCCA ATGTAGCCAG ATGCTGGGCG AATGAGACAG CAACTCTCCT AGGTAAACAA
CTGGTAGAAC ATATTCCACC GCACGAGAAC TATTACGAGT ATTACGCCGA TGCAGGATAC
AAGTTGAAGG CACACGCGCC GGTGTGGATA GAAAATTTGA ACACACCTTC ATACTTGAAT
CAGGTGAAAG AAAAAGTTCG GCAAAACTTG AAATCCCTCA CGTTCGCACC GAGTGTTGAA
TTCAGCGAAG CACCTCCCGC CGTCCTCGTA CCGGAGTTGG ACGAGAGTGA TCTGAACCCA
GACGAAAGAT ATGGCGGGAG TTTGGGTCAA GACAGCGTCG TCATAAGTAA GGAAGAGTTC
TACGAAAACG ACTAA
|
|---|
| Protein sequence | MVAKERVCYY YDEEVGRNYY GPNHPMKPHR LCMTHNLILA YDLHKHLQVF RPRACTNTEF
TQFHSEDYVD FLSKITPDKQ QQYVLEMQRF NLGEDCPIFD HMLDFCRRYT GGSIDGVRRL
NQGVSDIAIN WSGGLHHAKK AEASGFCYIN DLVLAILELL KQHARVVYID IDIHHGDGVE
EAFYMTDRVM TVSFHKYGDM FFPGTGGLRD IGINSGKYYS VNVPLNDGID DKSFVDLFKF
VMQDVMDSFQ PGAIVLQCGA DSLAGDRIGC FNLSLKGHAE CVSFMKSFAK PILVTGGGGY
TKSNVARCWA NETATLLGKQ LVEHIPPHEN YYEYYADAGY KLKAHAPVWI ENLNTPSYLN
QVKEKVRQNL KSLTFAPSVE FSEAPPAVLV PELDESDLNP DERYGGSLGQ DSVVISKEEF
YEND
|
|---|
| |