Gene OSTLU_39835 details

Gene Information

• Locus tag: OSTLU_39835
• ID: 4999735
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ostreococcus lucimarinus CCE9901
• Kingdom: Eukaryota
• Replicon accession: NC_009355
• Strand: -
• Start bp: 1049178
• End bp: 1052618
• Gene Length: 3441 bp
• Protein Length: 1146 aa
• GC content: 53%
• IMG OID: 640415156
• Product: predicted protein
• Protein accession: XP_001416013
• Protein GI: 145341844
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.695228
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACTGCC TCACGCGCGA CCCCTCGAAG ATCACCGCTC CGATCGCGAC GTTGGAGGAT 
AAATACGAGC TCCTGCCGGC GTTTCTCAAG GTGAGAGGGC TGGTCAGGCA GCACATCGAC 
TCGTTCAACT ACCTGGTGAA CGAGGAGATC AAAAAAATCA TTCACGCCAA GGCGAACGAG 
CGAGTGACGT GCGATAGTGA TCCAAACTTT TACCTGAAGT ACACGAATAT ACACGTTGGA 
CGACCGAGCG TGGAGGAAGA TTACGTGGTG GAGGAAATAA CGCCGCAGCA GTGTCGATTG 
CGAGACATGA CGTACGCGGC GCCGATTACG GTGGATGTGG AGTACACGCG TGGGAAGGAG 
ATCGTGACGC GTCAGGCGAA GAATGGTGTG GGTGGCGTCG TTATTGGACG GATTCCTTTG 
ATGCTGCGAA GCTCGCGGTG TGTGTTGACC GGAAAAAATG AGGACGAATT GGCGAGGTTG 
GGGGAGTGTC CGTTGGATCC GGGTGGATAC TTCATCGTCA AGGGCGTGGA GAAAGTGATT 
TTGATTCAAG AGCAGTTGAG CAAGAATAGA ATTATCATAG AAGTCGACGC CAAAGGAGAG 
ATTGGGGCAT CGGTGACTTC GTCGACGCAC GAACGGAAGA GTAAGACAAA CATCGTAGTC 
AAGCACGGAA AGTTCTACCT TCGACACAAC ACGTTTGCGG ACGACATTCC AATCATGATC 
GTTCTCAAGG CAATGGGGTT GGAGAGCGAT CAAGAAGCGG TGCAAATGAT CGGATCGGAA 
CCAGCGTACG CGATGCTTTT GGGGCCGACT TTACAGGAGT GTCAAGCAGC TGGAGTTTTC 
ACTACGCAGC AGGCGCTAGA GTATTGCGCG AACAAGGTGC GCGTGGTGAA GACGCACATG 
ACGAATAGAC CGGGTGTGCG AAACTTCGGT AGATCGCGCG TAGATGAAGC GCGCGACATT 
CTTGCCGGCG TCGTACTCGC ACACGTGCCC GTGACGTCGT ATGACTTTAG GCAAAAGTGC 
GCTTACATTT CCATCATGGT TCGCAGAATT CTGAACGCGA TGCTCGACCC GACGCAGATC 
GATGACAAGG ACTACTATGG TAACAAGCGT CTTGAACTCG CCGGTCAGCT CATTGCCCTA 
TTGTTTGAAG ATTGCTTCAA ACGTTTGAAC GCTGATTTGA AGCGACAAGC CGACGCCGTG 
CTTTCCAAAG CAAATCGTGC GACGCAGTTT GACATCTTAA AGTGCATTCG TCAAGACACC 
CTGAGTAACG GCCTGGAACA CGCAATTTCG AGCGGTAACT GGACGGTAAA GCGTTTTAGA 
ATGGAACGAA AAGGCGTGAC TCAAGTGCTG AGTCGACTGA GTTTCATCAG CGCGCTCGGT 
ATGATGACGC GCATAACGTC TCAGTTTGAA AAGACCAGAA AGGTTTCCGG TCCGCGGGCG 
TTACAACCGA GTCAATGGGG GATGCTCTGC CCGAGTGACA CTCCCGAAGG AGAGTCATGC 
GGGCTCGTAA AAAACTTGGC GCTGATGACG CACGTCACGA CGGATGACGA GGAGGAGCCG 
CTTCGCCGTT TAGCACACGC GCTCGGTGTA GAACCGCTTA CGTGGTTAAA CGCCGGTGAG 
ATGCATTCGC CGTCTGGTGC GCACGTTTTG ATGAACGGTT CCCTGCTCGG CGTGCACGCG 
CAACCCGAAG CGTTCTCGCA CGCGTTTAGA AAGCTGCGAC GGGCGGGGCG AATTGGTGAG 
TTCGTTTCTG TGTACACTGC GGATGGATGC GTGTACATTT CTTCAGACGG TGGACGAGTG 
TGTCGACCAC TCATCATCAT CGAGCGTGGT GAGCCTTTAC TGACTCAAGA ACATCTCGAC 
GAGCTGAAAG ATGGTCATCG TACGTTCAAT GATTTCCTAC GCGAAGGATT AGTCGAGTAC 
CTGGACGTGA ATGAAGAGAA CAATTCGTAC ATTGCGTTGT ACGAAGACGA GGTGAACGAC 
GAGACGACGC ACTTGGAGAT TGAACCTTTC ACTTTGCTTG GCGTTTGTGC TGGCATCATC 
CCGTATCCTC ATCACAATCA GTCACCGCGA AATACATATC AATGCGCCAT GGGTAAGCAA 
GCGATGGGTA ATATTGCGTT CAATCAATTA AACCGAATGG ACACGTTGAT GTACTTGCTC 
GTATACCCGC AAAAGCCAAT CGTCAAGACA AAGACCATAG AGTTAATAGG CTATGATCGT 
CTCGGTGCGG GTCAAAATGC GACAATTGCC GTGATGTCGT ATAGTGGGTA CGACATCGAA 
GACGCCATCG TGATGAATCG CGCGTCTCTT GACCGAGGTT TTGGCCGGTG CACGGTGTTG 
CGCAAATACT CTGCGCAGGT GAAAAAGTAT AGCAATAGAA CCATGGACCG AATCGTCGGG 
CCCAAAGATG ATCATCGCGC GAACCAAAAT AGTCGACATC ACTTATTAGA TGATGATGGC 
ATCGCCGCCG TCGGTGGTCG CATCAAGCCT GGTGACATTT ATGTCAACAA GCAAACGCCG 
GTGAACACTC GGGATCCGAT GGCGAATCCG CACGCGATGC CAGACACCAT GTATCGCTCG 
AATCCGCTTT CATACAAAGG TCCCGCAGGT GAATCGGCGA TTGTTGATAA AGTCTTACTC 
ACAATGACGG ATGAAGGGCA ATTCAATATC AAGACGCTCG TGCGTCAGAC GCGTCGACCA 
GAAGTTGGTG ATAAGTTTTC TTCTCGTCAT GGCCAGAAAG GCGTTTGCGG CATCATCCTC 
GATCAGGAAG ATTTCCCGTT CAGCGAACGT GGGATTACTC CTGACCTCAT CATGAACCCG 
CACGGGTTCC CGTCACGTAT GACGGTCGGA AAGATGATCG AACTTCTCGG CGGTAAGGCT 
GGACTCGAGA GCGGCCGCTT CCACGACGGA ACCGCGTTTG GTGGAGACAC GGTTGAAGCC 
ATTCAACAAA CCTTGGTTGA ATCCGGGTAC TCTTACAAAG GCAAGGACAT GCTTCACTGT 
GGAATCACCG GCGAAGCGCT TGAAGTCAAC GTTTTCATGG GTCCAGTGTA CTATCAAAAG 
CTCAAACACA TGGTTCAGGA CAAGATGCAC GCTCGCGCGC GCGGTCCTCG CGTCGTCCTC 
ACACGCCAAC CCACCGAAGG TCGAGCCCGC GACGGTGGTT TGCGCCTCGG CGAGATGGAA 
CGCGATTGCC TCATCGGTTA TGGCGCATCA CAACTTATTT TGGAGCGTTT GATGATCTCT 
TCCGATCAAT TCGAAGCGCA AGTCTGCACC AAGTGCGGCT TGCTCGGATT CCAGCACCAC 
ATCACCCGCA GGAACGCGTG CACGCTGTGC AAAACTGAGG CCGAAGTCGC GACGTTAAAG 
CTCCCGTACG CGTGCAAGCT CTTATTCCAA GAGTTGCAAT CCATGAACAT AGCACCTCGG 
TTATCTTTGA CCGAGGCTTA G 

 

Protein sequence

MDCLTRDPSK ITAPIATLED KYELLPAFLK VRGLVRQHID SFNYLVNEEI KKIIHAKANE 
RVTCDSDPNF YLKYTNIHVG RPSVEEDYVV EEITPQQCRL RDMTYAAPIT VDVEYTRGKE 
IVTRQAKNGV GGVVIGRIPL MLRSSRCVLT GKNEDELARL GECPLDPGGY FIVKGVEKVI 
LIQEQLSKNR IIIEVDAKGE IGASVTSSTH ERKSKTNIVV KHGKFYLRHN TFADDIPIMI 
VLKAMGLESD QEAVQMIGSE PAYAMLLGPT LQECQAAGVF TTQQALEYCA NKVRVVKTHM 
TNRPGVRNFG RSRVDEARDI LAGVVLAHVP VTSYDFRQKC AYISIMVRRI LNAMLDPTQI 
DDKDYYGNKR LELAGQLIAL LFEDCFKRLN ADLKRQADAV LSKANRATQF DILKCIRQDT 
LSNGLEHAIS SGNWTVKRFR MERKGVTQVL SRLSFISALG MMTRITSQFE KTRKVSGPRA 
LQPSQWGMLC PSDTPEGESC GLVKNLALMT HVTTDDEEEP LRRLAHALGV EPLTWLNAGE 
MHSPSGAHVL MNGSLLGVHA QPEAFSHAFR KLRRAGRIGE FVSVYTADGC VYISSDGGRV 
CRPLIIIERG EPLLTQEHLD ELKDGHRTFN DFLREGLVEY LDVNEENNSY IALYEDEVND 
ETTHLEIEPF TLLGVCAGII PYPHHNQSPR NTYQCAMGKQ AMGNIAFNQL NRMDTLMYLL 
VYPQKPIVKT KTIELIGYDR LGAGQNATIA VMSYSGYDIE DAIVMNRASL DRGFGRCTVL 
RKYSAQVKKY SNRTMDRIVG PKDDHRANQN SRHHLLDDDG IAAVGGRIKP GDIYVNKQTP 
VNTRDPMANP HAMPDTMYRS NPLSYKGPAG ESAIVDKVLL TMTDEGQFNI KTLVRQTRRP 
EVGDKFSSRH GQKGVCGIIL DQEDFPFSER GITPDLIMNP HGFPSRMTVG KMIELLGGKA 
GLESGRFHDG TAFGGDTVEA IQQTLVESGY SYKGKDMLHC GITGEALEVN VFMGPVYYQK 
LKHMVQDKMH ARARGPRVVL TRQPTEGRAR DGGLRLGEME RDCLIGYGAS QLILERLMIS 
SDQFEAQVCT KCGLLGFQHH ITRRNACTLC KTEAEVATLK LPYACKLLFQ ELQSMNIAPR 
LSLTEA