Gene OSTLU_29142 details

Gene Information

• Locus tag: OSTLU_29142
• Symbol: PPR7
• ID: 4999912
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ostreococcus lucimarinus CCE9901
• Kingdom: Eukaryota
• Replicon accession: NC_009355
• Strand: -
• Start bp: 888728
• End bp: 890675
• Gene Length: 1948 bp
• Protein Length: 632 aa
• GC content: 57%
• IMG OID: 640415333
• Product: pentatrichopeptide repeat (PPR) protein
• Protein accession: XP_001415964
• Protein GI: 145341746
• TIGRFAM ID: [TIGR00756] pentatricopeptide repeat domain (PPR motif)

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.00572015
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACGACG ACGCGTTCGA GAGGTTGGAT AAGCAAAAGG CGAGTCGACG GGAGAAGCGC 
ACGGCGGTGC GGGCGGTGCG CGAGGAGGCC GCGAGTGGTG GTGCGAGAGG CGGGACGGAC 
GCGCGGTTGT CGTTTTTGTA CGAAGAGGGG GTGAACGCGA ACGACGCGGG GGCGGTGACG 
AAGTGCAACG ACGTGTTGCG GCGATGCGCG AGCATGGAGG AAGTGCTCGG TTTGGTGAAG 
GAAATGCGAG ACGCGGGGTT GGAGCCCGTG GAGAGCACGT ACGTAGCGGT GATGCTCGTG 
TGTCAAAACG TTGGCTCGCC CGAACGTGCG GTGCAGGTGT ACGACGCGAT GACGGAGGCG 
CAAGTGCGCA TGACGGGACG TACGTTTCAT CTGGCCATCG AGTTGGCGCT CAAGGCTGAG 
ATGTTCAAGG ACGCGCTTCG TATCAAAGAT GATATGCGCT ATGTCGGGTT GCCGGTGAGC 
TCGAAGCTTT ACGTGACGCT TCTGCGCGCG TTGGCGGACA ACGACATGGG AAAGCGAAAG 
GGGCCACAGG AGCGACTCAT TCGCACGTGT CGTCTTTTTG AAGAGATGCT CAACGAAGAT 
GTCGACCCAG CGCCGGCGGC GTATCACACT CTCATCGTTG CCGCACATCG CGCGAATCAG 
CACGACCTGG CGGTGCGCAC TTTCGATGAA CTCATCGAAG AGGGGATCAC GCCGGCGAGA 
CAAACGTACG AGACTGCCCT CGATTCCATG GCACGAAGCG GACTTCTCGC GCAAGCTTTG 
GAAGTTTTTG TGCAGATGAA GTCGAACGGA CTCATGCCAC GAAAGGTGAC GTACAACACA 
CTTTTGAGTG CTTGCGTGAA CGCACCGCAA CCGCGCGTGG AGGCGGCGTT TGAAATTTTT 
GAAGAAATGC AAACGAAAGG CAACGTGACG CCGGACAGGA GCACGTACTC ACTACTCATC 
GACGCCGCGT GTAAAGCGGG TAAACCCGAG ATGGCGTTTG ACGCGTTCAG CCACATGCGG 
GATTCTGGTA TTGAAATCCA AGTCGGCACG TTAAATCGAT TGATTCACGC TGCGGGATTG 
AACGCCAAGG AGGACTCTAC ATCGGTACAA GCAACTCTCG AGCTTTATGA CGCGATGAAA 
AAGCTTGGCG TTGAACCAGA CGTGATCACG TATGGTAGTT TGATCGCTAC ATGCGCTAAG 
GCGCGCGATG CGGCAACTGC GATAAAGGTG TATGAGGAAA TGCGCGCCGC GGGCGTCGAG 
CCAAACCGCA TCTTGTTCAA CGTCTTGATC AACGCCCTCG GGCGTGCGAA CCGTAGCGAA 
GAGGCGATGG AGTACTTTCG CGTGATGCAG AAGCAATCCG AAGTGAATAG TTCGTTAACT 
CCGAATCGGG AGACGTACAC GACGGTTTTC GATGCGTTCA TCGGCGGCGG CGGCGCAGAG 
CTCGCCATGG CGAAACAATC GCTCGAATCA GGCGACGACG CATCCTTCGT GCACAGCGCC 
CAGGTTGCGA AGTTGCGCGA AATCTACGCT CAGGGCGTTG AACACGGTGT GTACGAAGAC 
TTGTCAGTCG TACTGTCGAC GCGCGAAGCG GAGTCTGAGT CTTGTACGAT AAACATGAAC 
CAGCTGTCGC GCACCGAAGC TACGGTGGCG ACGCTCGTCC TGCTCGAACG CATGTCCACG 
CTTTCGAGCG ATCAAGTACC ATCCGCCATG TTCATCTACG CGGGTAAGGT AAAGCCGGGT 
AAAAACGGTG CCCAGCGTCG ATTGTTGGCG ATCGAAACTG TCCTTCGTGC GGCTAACGTC 
AAGTTTGAAA TCGGCGAAGT CGGTTCCGCC GAACTCATCG CCGTGAAGGG CAAGCACTGT 
CGCGCGTGGA TCGAGAAAAA CGCCGGCACG TTTGTGTAAA TACTCTAGAC CTTAGTCATT 
CTTTTAACCA TCAGATGTGC TATTTGCT 

 

Protein sequence

MDDDAFERLD KQKASRREKR TAVRAVREEA ASGGARGGTD ARLSFLYEEG VNANDAGAVT 
KCNDVLRRCA SMEEVLGLVK EMRDAGLEPV ESTYVAVMLV CQNVGSPERA VQVYDAMTEA 
QVRMTGRTFH LAIELALKAE MFKDALRIKD DMRYVGLPVS SKLYVTLLRA LADNDMGKRK 
GPQERLIRTC RLFEEMLNED VDPAPAAYHT LIVAAHRANQ HDLAVRTFDE LIEEGITPAR 
QTYETALDSM ARSGLLAQAL EVFVQMKSNG LMPRKVTYNT LLSACVNAPQ PRVEAAFEIF 
EEMQTKGNVT PDRSTYSLLI DAACKAGKPE MAFDAFSHMR DSGIEIQVGT LNRLIHAAGL 
NAKEDSTSVQ ATLELYDAMK KLGVEPDVIT YGSLIATCAK ARDAATAIKV YEEMRAAGVE 
PNRILFNVLI NALGRANRSE EAMEYFRVMQ KQSEVNSSLT PNRETYTTVF DAFIGGGGAE 
LAMAKQSLES GDDASFVHSA QVAKLREIYA QGVEHGVYED LSVVLSTREA ESESCTINMN 
QLSRTEATVA TLVLLERMST LSSDQVPSAM FIYAGKVKPG KNGAQRRLLA IETVLRAANV 
KFEIGEVGSA ELIAVKGKHC RAWIEKNAGT FV