| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mflv_4248 |
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| Symbol | ligA |
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| ID | 4975561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Mycobacterium gilvum PYR-GCK |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009338 |
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| Strand | - |
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| Start bp | 4510045 |
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| End bp | 4512183 |
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| Gene Length | 2139 bp |
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| Protein Length | 712 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640458475 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_001135505 |
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| Protein GI | 145224827 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0769437 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.764514 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTCCCG AGGCGATCCC GGATCCCGAG TCGATGCTGG CCGAGCAAGC CCACGATGCG
CTCGACCCCG ACCTGCGCCG CAGTTGGCAG GAGCTCGCCG ACGAGGTCCG TGAACATCAG
TTCCGCTACT ACATCCGCGA CGCCCCGATC ATCACCGACG CCGAATTCGA CCAACTGCTG
CGCCGGCTAC AGGCGCTCGA AGACGAGTAT CCGGAGCTGC GCACGCCCGA CTCGCCGACC
CAGCTCGTCG GCGGGGCCGG GTTCGCCACC GACTTCACCG CCGCCGAACA CCTCGAGCGC
ATGCTCAGCC TGGACAACGT GTTCGACCTC GAGGAACTGG CCGCGTGGGC CGCACGGATC
AGGACCGAGA TCGGCGCGGA CGCGCAGTAC CTGTGCGAGC TCAAGATCGA CGGTGTCGCG
CTGGCTCTCG TCTACCGCGA CGGACGGCTG GAGCGGGCGG CGACACGGGG GGACGGACGT
ACCGGCGAGG ACGTCACGCT CAACGCCCGC ACAATCGAAG ACATCCCTGA AAGGCTCAGC
GGCACAAATG AATTCCCGTT GCCCACCGTT GTGGAGGTGC GTGGCGAGGT CTTCTTCCGG
GTCGCCGACT TCGAAGACCT GAACGCCGGG CTGGTCGCCG AGGGCAAGCC GCCGTTCGCC
AACCCGCGCA ACAGCGCCGC CGGTTCGCTG CGCCAGAAGA ACCCGGCCGT CACGGCGCGC
CGCCGGTTGC GGATGATCTG CCACGGACTG GGGCATGTGG AGTCCTCCGG AGGTTCCCCG
TTCCCGACGC TGCACGACGC CTACCGCGCA CTCAAGGCGT GGGGGCTGCC GGTTTCCGAC
CACACCGCCC AGGTCACCGG GCTCGACGCG GTCACCGAGC GCATCGCCTA CTGGGGTGAG
CACCGCCATG ACGTCGAACA CGAAATCGAC GGCGTGGTGG TCAAAGTCGA TGCCGTGGCG
CTGCAACGCC GCCTCGGCGC GACCTCGCGC GCACCGCGGT GGGCGGTCGC CTACAAGTAT
CCGCCCGAAG AGGCCCAGAC CAGACTGCTC GACATCCGGG TCAACGTCGG GCGCACAGGA
CGGGTGACGC CCTTCGCCTA CATGGAGCCG GTCAAGGTGG CCGGTTCGAC GGTCGGGCTG
GCCACGCTGC ACAACGCGTC GGAGGTCAAA CGCAAAGGTG TGCTGATCGG CGACACCGTC
GTCATCCGCA AGGCGGGCGA CGTCATCCCC GAGGTACTGG GACCCGTCGT GGACCTACGC
GACGGCAGTG AGCGCGAATT CGTCTTCCCG ACCCACTGTC CGGAGTGCGG AAGCGAGCTG
GCCCCCGCCA AGGAGGGCGA CGCCGACATC CGCTGCCCGA ACACGCGCAG TTGCCCGGCG
CAGTTGCGGG AGAGGGTGTT TCACGTCGCC GGTCGGGGGG CCTTCGACAT CGAGGGGCTC
GGCTACGAGG CGGCGACGGC GCTGCTGCAG GCCGGCGTCA TCGCCGATGA GGGTGACCTG
TTCGGGCTCA CCGCGGACGA CCTGCTGCGC ACCGAGTTGT TCACCACCAA GGCCGGTGAG
CTGTCGGCCA ACGGCAAGCG GCTGCTGGCC AACCTGGGCA AGGCCAAGGC GCAACCGTTG
TGGCGCGTGC TGGTCGCACT GTCGATCCGG CACGTGGGCC CGACCGCGGC CCGCGCGCTG
GCCACCGAGT TCGGCAGCCT GGAGGCCATC GAGACCGCGT CGGAGGAACA GCTCGCCGGC
ACCGAAGGCG TCGGGCCGAC GATCGCGGCG GCGGTCATCG ACTGGTTCAC CGTCGACTGG
CACCGCGCGA TCGTCGACAA GTGGCGCGAG GCCGGGGTCC GGATGGCCGA TGAACGCGAC
GCCAGCATCG AACGCACGCT GGAGGGGCTC TCGATCGTCG TGACCGGATC GCTGGCCGGC
TTCAGCAGGG ACGAGGCCAA GGAGGCGATC ATCGCGCGCG GCGGCAAGGC GGCCGGTTCG
GTGTCGAAGA AGACCGCGTA CGTCGTCGCC GGCGACGCGC CGGGATCCAA GTACGACAAG
GCGATCGAAC TGGGCGTACC CGTCCTCGAC GAGGACGGGT TCCGTCGACT GCTCGCAGAA
GGTCCGGAGC GCGACGCCGA GGACGGCGAG CCAGGCTAG
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| Protein sequence | MSPEAIPDPE SMLAEQAHDA LDPDLRRSWQ ELADEVREHQ FRYYIRDAPI ITDAEFDQLL
RRLQALEDEY PELRTPDSPT QLVGGAGFAT DFTAAEHLER MLSLDNVFDL EELAAWAARI
RTEIGADAQY LCELKIDGVA LALVYRDGRL ERAATRGDGR TGEDVTLNAR TIEDIPERLS
GTNEFPLPTV VEVRGEVFFR VADFEDLNAG LVAEGKPPFA NPRNSAAGSL RQKNPAVTAR
RRLRMICHGL GHVESSGGSP FPTLHDAYRA LKAWGLPVSD HTAQVTGLDA VTERIAYWGE
HRHDVEHEID GVVVKVDAVA LQRRLGATSR APRWAVAYKY PPEEAQTRLL DIRVNVGRTG
RVTPFAYMEP VKVAGSTVGL ATLHNASEVK RKGVLIGDTV VIRKAGDVIP EVLGPVVDLR
DGSEREFVFP THCPECGSEL APAKEGDADI RCPNTRSCPA QLRERVFHVA GRGAFDIEGL
GYEAATALLQ AGVIADEGDL FGLTADDLLR TELFTTKAGE LSANGKRLLA NLGKAKAQPL
WRVLVALSIR HVGPTAARAL ATEFGSLEAI ETASEEQLAG TEGVGPTIAA AVIDWFTVDW
HRAIVDKWRE AGVRMADERD ASIERTLEGL SIVVTGSLAG FSRDEAKEAI IARGGKAAGS
VSKKTAYVVA GDAPGSKYDK AIELGVPVLD EDGFRRLLAE GPERDAEDGE PG
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