Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mflv_3939 |
Symbol | |
ID | 4975254 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Mycobacterium gilvum PYR-GCK |
Kingdom | Bacteria |
Replicon accession | NC_009338 |
Strand | + |
Start bp | 4198579 |
End bp | 4200045 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640458166 |
Product | RNA polymerase sigma factor |
Protein accession | YP_001135198 |
Protein GI | 145224520 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTGCGCCC CGACGACCCG CACGACCGAA AGGGTGTACG TGGCAGCGAC CAAGGCCAGC GCGGCGACCG ACGAGCCGGT GAAGCGCACC GCCGCCAAGG CCCCCGCGAA GAAGGCGCCC GCGAAGAAGG CCACCAAGGC CACCAAGCCC CGCGCTGCGA AGTCCGCCGA CGCCCCGGCG ACGCGCGGCC GCGCCAAGAA GGCCACCGCC GCCGAGCCGG GTGTCGTCGA CGACGAACTC ACCGGCACCG AGGTCGACGC CACCGACGAC ATCGAGCCCG GCGAGGATCT CGTCGACGAC GGTGACCTCG AGCTCGACGA CATCGAGGTC GAGGACGAGG CCACCGAGGA CGACGATTCC GACGACGAGG CCGCCGAGGC CGATCCGGTG GTGGCCACCA CCAAGGCCGC CGCGAAGCCG GCCAAGGAGG CCGACGACGA TTCGCTCCCC GAGCCGTCGG AGAAGGACAA GGCCTCCGGA GACTTCGTCT GGGACGAAGA GGAGTCCGAG GCGCTGCGTC AGGCCCGCAA GGACGCCGAG CTCACCGCAT CGGCCGACTC GGTTCGCGCC TACCTCAAGC AGATCGGCAA GGTCGCGCTC CTCAACGCCG AGGAAGAGGT CGAGCTCGCC AAGCGCATCG AGGCCGGCCT GTACTGCACG CAGCTGATGG CCGAGTTCGC CGAGAAGGGC GAGAAGCTCA CCACCGCGCA GCGGCGTGAC TACATGTGGA TCTGCCGCGA CGGCGACCGC GCGAAAAATC ATCTGCTGGA AGCGAACCTG CGCCTGGTGG TGTCGCTGGC CAAGCGCTAC ACCGGCCGCG GCATGGCGTT CCTGGACCTC ATCCAGGAGG GCAACCTCGG CTTGATCCGC GCCGTGGAGA AGTTCGACTA CACCAAGGGT TACAAGTTCT CGACCTACGC GACGTGGTGG ATCCGTCAGG CGATCACCCG CGCGATGGCC GATCAGGCGC GCACCATCCG CATCCCGGTG CACATGGTCG AGGTCATCAA CAAGCTCGGC CGCATCCAGC GCGAGCTCCT TCAGGACCTG GGTCGCGAGC CCACCCCCGA AGAGCTGGCC AAGGAAATGG ACATCACGCC GGAGAAGGTG CTGGAGATCC AGCAGTACGC GCGTGAGCCG ATCTCGCTGG ACCAGACCAT CGGCGACGAA GGCGACTCGC AGCTCGGCGA TTTCATCGAG GACTCCGAGG CCGTCGTCGC CGTCGACGCC GTGTCCTTCA CGCTGCTGCA GGACCAGCTG CAGTCGGTGC TGGAGACGTT GTCCGAGCGT GAGGCAGGCG TCGTCCGCCT GCGGTTCGGC CTCACCGACG GCCAGCCGCG CACCCTCGAC GAGATCGGCC AGGTCTACGG CGTGACGCGC GAGCGCATCC GTCAGATCGA GTCGAAGACG ATGTCGAAGT TGCGCCATCC CAGCCGGTCT CAGGTGCTGC GCGACTACCT GGACTAG
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Protein sequence | MCAPTTRTTE RVYVAATKAS AATDEPVKRT AAKAPAKKAP AKKATKATKP RAAKSADAPA TRGRAKKATA AEPGVVDDEL TGTEVDATDD IEPGEDLVDD GDLELDDIEV EDEATEDDDS DDEAAEADPV VATTKAAAKP AKEADDDSLP EPSEKDKASG DFVWDEEESE ALRQARKDAE LTASADSVRA YLKQIGKVAL LNAEEEVELA KRIEAGLYCT QLMAEFAEKG EKLTTAQRRD YMWICRDGDR AKNHLLEANL RLVVSLAKRY TGRGMAFLDL IQEGNLGLIR AVEKFDYTKG YKFSTYATWW IRQAITRAMA DQARTIRIPV HMVEVINKLG RIQRELLQDL GREPTPEELA KEMDITPEKV LEIQQYAREP ISLDQTIGDE GDSQLGDFIE DSEAVVAVDA VSFTLLQDQL QSVLETLSER EAGVVRLRFG LTDGQPRTLD EIGQVYGVTR ERIRQIESKT MSKLRHPSRS QVLRDYLD
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