| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_3211 |
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| Symbol | |
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| ID | 4957380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | - |
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| Start bp | 3491127 |
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| End bp | 3493097 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640182399 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_001114538 |
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| Protein GI | 134301042 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACAGACA ATAATGCAAA AACACAAGAC AATCTAAACT TAGAAGAATT TATGGCGAAG
TATGATAAAG AGTCCGATTA CAGGAGATTG AAGGGTTCAA TTGGGCTTGC AGTGACAGTA
CTGGCCATCG TCTTCTCTCT ATTCCAATTA TATACTGCGG TTTACGGGGT TTTAGATGCT
CAAATTCAAA GGGCGATTCA CTTATCCTTT GGTTTGGCCT TAGTATATCT ATTATATCCG
GCTAGAAAGT CTTGGTCCCG GAGTAAACTC CACTGGTTTG ATGTATTGAT GGCAGTGGCA
GCAGTGACGA CACCGCTGTA TATCGTGATC TCCTATAAGG AATTGGTTAT GCGTGCGGGC
ATTGTAACCT CCACAGATAT GCTAATGGGA GGGTTAGGAA TCCTCTTTGT GATGGAAGCA
GCCCGTAGGG TAGTGGGTTG GCCCATTGTC ACCGTGGCAA TCCTTTTCCT GGGCTATGCC
TTTGCCGGAC CGTATCTTCC CGGGGCCTTT GCACACCAAG GTGCAACCAT CAGTGGTTTG
GTGGGCCATC TTTACTATAC CACCGAGGGA ATCTTTGGTA TTCCGTTGGG TGTATCATCG
ACTTTTATTT TCTTGTTTAT TTTATTTGGT GCCTATCTGG AAAAAACTGG TTTGGGGAAG
TTTTTCATTG ATCTGGCCAA TGCCATTGCA GGCTGGGCCA GTGGGGGACC AGCTAAAGTT
GCGGTGCTTT CCAGTGGTTT GATGGGCACC GTATCTGGCA GCTCTGTGGG AAACGTTGCC
GGAACAGGTA GTTTAACCAT TCCCATGATG AAAAAGCTAG GGTATAAACC TGAATTTGCC
GGTGCCGTAG AAGCTGCAGC TTCCACCGGG GGCCAACTTA TGCCACCCAT TATGGGTGCA
GCAGCCTTTT TAATGGCAGA GTTTGTCGGA ACACCCTATG TAAATGTTGT CAAGGCCGCA
GCATTGCCTG CGTTGTTGTA TTTTACCGGT ATCTGGATCG GAGTTCACCT GGAAGCTAAA
AAAACTGGCT TGAAGGGCAT CCCCAGGCAT CAACTGCCGA AGGTAGGGGT TATCCTGAAA
GAGCGGGGAC ACTTGGCGAT TCCCTTAGTG GTAATTGTTT ACCTACTGGT TAGCGGCTAC
ACTCCCATGC GTGCAGCTCT CTGGGCCATA ATATTGGCTA TAGGTGCCTC CATGCTGCGT
AGTTCCACCA GAATTTCCCT GGGGGATATT ATAAGAGGGC TGGAGGAAGG TGCTAGGTCT
GCCCTGGGTG TTATTATTGC CTGTGCCACA GCAGGGATTA TTATTGGTGT TGTAACCAAG
ACAGGTCTTG GTCTTAAATT GGGGTCAGCC CTCATTGATC TGGCCCACGG TCAATTACTG
CCAACCTTGT TCTTTACCAT GATTACTTCC ATTATATTAG GTATGGGTGT ACCTACCACT
GCTAACTATG TTATTACCTC AACCATTGCT GCGCCCACAC TGGTCCAACT GGGGGTACCG
GTGCTGGCGG CTCATATGTT TGTATTCTAT TTCGGTATTA TTGCGGATGT TACCCCTCCG
GTGGCTCTGG CAGCCTTTGC CGGAGCAGGG ATTGCCGGCA GTGACCCTAT GAAAACAGGG
GTAAACGCAT CAAAACTAGC CATAGCGGCC TTTTTGATTC CTTATATCTT TGTCCTGTCC
CCGTCATTGT TGCTCATTGA TACCACCTTA CCGAAGGTCT TACTGATGCT GACAACCTCA
CTGATTGGTA TGACAGCCAT AGCCTCGGCG GTGGCCGGCT ATTTCATGAC CCATGTCCAG
GGGCTGAACC GATTATTATT TTTCGTTGGT GGTTTGCTCA TGATAGATCC TAAGCTGCTA
ACAGACTTGA TAGGCCTAGG ATTATTAGTC CTTGGTTTAG CTATGCAGTG GGCAAAATGC
AAAAAAGATA AACATACTAT ACAAGCAGGT AAGGGATTTC CTAATCTATA G
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| Protein sequence | MTDNNAKTQD NLNLEEFMAK YDKESDYRRL KGSIGLAVTV LAIVFSLFQL YTAVYGVLDA
QIQRAIHLSF GLALVYLLYP ARKSWSRSKL HWFDVLMAVA AVTTPLYIVI SYKELVMRAG
IVTSTDMLMG GLGILFVMEA ARRVVGWPIV TVAILFLGYA FAGPYLPGAF AHQGATISGL
VGHLYYTTEG IFGIPLGVSS TFIFLFILFG AYLEKTGLGK FFIDLANAIA GWASGGPAKV
AVLSSGLMGT VSGSSVGNVA GTGSLTIPMM KKLGYKPEFA GAVEAAASTG GQLMPPIMGA
AAFLMAEFVG TPYVNVVKAA ALPALLYFTG IWIGVHLEAK KTGLKGIPRH QLPKVGVILK
ERGHLAIPLV VIVYLLVSGY TPMRAALWAI ILAIGASMLR SSTRISLGDI IRGLEEGARS
ALGVIIACAT AGIIIGVVTK TGLGLKLGSA LIDLAHGQLL PTLFFTMITS IILGMGVPTT
ANYVITSTIA APTLVQLGVP VLAAHMFVFY FGIIADVTPP VALAAFAGAG IAGSDPMKTG
VNASKLAIAA FLIPYIFVLS PSLLLIDTTL PKVLLMLTTS LIGMTAIASA VAGYFMTHVQ
GLNRLLFFVG GLLMIDPKLL TDLIGLGLLV LGLAMQWAKC KKDKHTIQAG KGFPNL
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