Gene Dred_3170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_3170 
SymbolprfA 
ID4957218 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand- 
Start bp3449333 
End bp3450403 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content49% 
IMG OID640182358 
Productpeptide chain release factor 1 
Protein accessionYP_001114497 
Protein GI134301001 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.000384415 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTACGATA AACTCCAGGC GTTAGAGGAT AGATTTGAGC AACTGGAAAG TCAAATCAGT 
GACCCGGAAG TCATGGCAGA CCGTGCCAAG TGGCAGCAAC TGGTGAAGTC TCACTCTGAT 
TTAGCGGAAG TGGTGGACGT TTTCCGCCAG TACAAAAAGG CCAAGGAAGA TCTTCAGGAA 
AATAAACAAA TGTTGGAGGA TAAACTGGAG CCGGACTTCC GTGAGATGGT CGAATTAGAA 
ATAGAAGAGC TTACAAGCAA AATTGAGGAA CAGGAAAACA AACTAAAAAT TTTGCTGTTA 
CCCAAGGATC CTAACGACGA TAAGAACGTT ATTATGGAAA TCCGCGGTGG TACCGGTGGA 
GACGAAGCAG CTCTCTTTGC TGGGGATTTA TTTAGAATGT ACTCCCGTTA TGCGGAGAAG 
AAGGGCTGGC GTACCGAGAT TATAGATGCC AATGAAACAG ATTTAGGTGG TTTCAAGGAA 
GTTACCTTTG TTATTGAAGG GAAAGGTGCC TTTAGCACCC TGAAGTTCGA GAGCGGTGTA 
CACAGGGTAC AGCGGGTCCC GGCCACCGAA AGCGGCGGTC GCATTCATAC CTCTGCTGCC 
ACCGTGGCAG TACTGCCAGA AGCCGAAGAA GTTGATATCG ATATCAATGC CAATGATATT 
AGGATCGACT TGTTCTGTGC CAGTGGTCCC GGCGGACAGT GCGTAAACAC CACCCAGTCC 
GCAGTGCGGA TTACCCACAT CCCCACCGGT ACAGTGGTAT CCTGTCAGGA TGAAAAATCC 
CAGCATAAGA ATAAGGATAA AGCCATGCGT GTACTGAGGG CCCGTCTACT GGACAAAGCC 
CAGGATGAGC AGCAAAAGGC CATTGCAGGT GCACGGAAAT CCATGGTGGG CAGTGGTGAC 
CGCAGCGAAC GCATTCGTAC CTACAACTTC CCGCAGAACC GTATTACCGA CCACCGGATT 
GGACTTACCT TACACCGGCT GGAGTATGTA TTACAGGGCG ACCTGGACGA ATTAATCGAT 
GCCTTAATCA CCACCGACCA GGCTGAACGA TTAAAGGCAG TAGAAGAATA A
 
Protein sequence
MYDKLQALED RFEQLESQIS DPEVMADRAK WQQLVKSHSD LAEVVDVFRQ YKKAKEDLQE 
NKQMLEDKLE PDFREMVELE IEELTSKIEE QENKLKILLL PKDPNDDKNV IMEIRGGTGG 
DEAALFAGDL FRMYSRYAEK KGWRTEIIDA NETDLGGFKE VTFVIEGKGA FSTLKFESGV 
HRVQRVPATE SGGRIHTSAA TVAVLPEAEE VDIDINANDI RIDLFCASGP GGQCVNTTQS 
AVRITHIPTG TVVSCQDEKS QHKNKDKAMR VLRARLLDKA QDEQQKAIAG ARKSMVGSGD 
RSERIRTYNF PQNRITDHRI GLTLHRLEYV LQGDLDELID ALITTDQAER LKAVEE