| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_3050 |
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| Symbol | |
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| ID | 4956716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | - |
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| Start bp | 3310224 |
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| End bp | 3312065 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640182238 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001114377 |
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| Protein GI | 134300881 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAACA AATTTAGAAT ACCTTTATTA ATGCTCTGTG ACGCAGTTTT AGTAAATCTG
GCCTTTTTGA TTCCCTGCTA TATTCATTAT CACGGCCAAT TTACCCAGGA GTACTTGGCC
GACATGCGGG GTTTTCTTCT GGCTACACCG GTTATTTTAC TTGTTTTTTA TGGCTCCAAG
CTATACCACC GTGTTTGGGC CTATGCAAGC ACCGGAGAAT TACTTACCAT TATTCAATCT
GTTTCGTTAG TAAGCCTCTT ATTTTTTATC CTCACCCATT TTATAGATGA ACCTCACTTA
GGAAAAACAA TTTTATCCTT TTGGGCCTTT GCCATTATTT TTGTTGGCGG TTCCAGGTTT
GCCTGGCGAC TGTATGTTGA GTATAAAGCG AAAAAAGGAT ATGTCAGAAT GGGAACTCCC
AAAAGAGCTT TGATTTATGG TGCAGGTTCC GCCGGTGCCC TGGTGGCCAG AGAATATAAA
AATCACTACA ACGGCAATCA ACCGGTTATT GGTTTTATCG ATGATGATAC CAAGAAACAC
CACCTGAGTA TTTATGATCT GCCTGTACTG GGCGGCAGAG AAAGTATTCC TTCATTAATA
TGTAAACATA ACATAGATGA AATTATCATT GCTATGCCTT CGGTTGCCGG AAAAAGTATG
CGTGATATTA TTCAGTTCTG TAAGGATACG GTGGGAGAGG TTAAGATCCT ACCGGGTGTT
TACCAGTTTT TAAATGGCAA TGTTTCCATA AGTAAAATTC GACCTGTAGA GATTGAGGAT
TTGCTGGGCA GGGAACCAGT ACAGGTGGAT CTTAAGGAAA TATCCCTTTA TCTCAAGGGA
AAAGTGGTCC TGGTAACCGG CGCCGGTGGC TCCATCGGTT CCGAGTTGTG CCGCCAAATC
GCACAAATGG ACCCGGCCAA AATTATTCTG CTGGGCCATG GGGAAAACAG CATCCATAAA
ATTTGGTTGG AGTTACGGGA CAAGTTCCCC CTGGTGCCCC TGGAAGTAGA GATCGCCGAT
GTTCGGGACC GTTTTAAACT ACAACTAACC TTTGAAAAGC ACCAACCGCA TGTTGTCTTT
CATGCCGCAG CCCATAAGCA TGTGCCGCTG ATGGAAATGC ACCCGGATGA AGCTGTGAAA
ACCAACGTCT TTGGGACAAA AAATGTGGCT GAAATGGCAG ATCGGGTAGG ATGCGAAAGA
TTTGTTCTGA TCTCTACGGA TAAGGCGGTT AACCCTTCCA GTGTTATGGG AGCAACCAAA
CGGATAGCAG AACTGGTGAT TCAGAATTTG TTCAAGGGGT CCCATACCAA GTTTGCTGCG
GTGCGCTTTG GCAATGTGCT GGGCAGTCGG GGTAGCGTTG TGCCCATCTT CAAAGAACAA
ATTGCCCGGG GGGGTCCTGT TACGGTGACT CACCCGGATA TGACCCGCTA CTTTATGACC
ATCCCGGAAG CAGTGCAACT GGTGATTCAA GCTGGTGCCA TGGCCGAGGG TGGGGAGGTT
TTCCTGCTGG ATATGGGGGA ACCGGTTAAG ATTGTGGATT TGGCGGCTAA CCTTATAAAG
CTATCTGGCT TTGAGCCAGG GAAGGATATT GAGATTAAAT ATACCGGCAT CCGTCCAGGG
GAAAAACTTT TTGAGGAATT GCTGACGGCT GAAGAGGGTT CCTCCAGCAC CAAGCACAAA
AGGATTTTTG AGGCAAAGCC GGTGGAGATT GATGAGGCAG TGCTGCTGCA GGAACTGCTG
AAGCTGGAGA AGAGGGAAGT AACGGAGCAC CAGGAGATTT TTGGCAGGTT GTTGCGGGTG
ATGCCGGAGT TGGTGCTGTA TGTGGAGGGC AGGACGGCTT AG
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| Protein sequence | MTNKFRIPLL MLCDAVLVNL AFLIPCYIHY HGQFTQEYLA DMRGFLLATP VILLVFYGSK
LYHRVWAYAS TGELLTIIQS VSLVSLLFFI LTHFIDEPHL GKTILSFWAF AIIFVGGSRF
AWRLYVEYKA KKGYVRMGTP KRALIYGAGS AGALVAREYK NHYNGNQPVI GFIDDDTKKH
HLSIYDLPVL GGRESIPSLI CKHNIDEIII AMPSVAGKSM RDIIQFCKDT VGEVKILPGV
YQFLNGNVSI SKIRPVEIED LLGREPVQVD LKEISLYLKG KVVLVTGAGG SIGSELCRQI
AQMDPAKIIL LGHGENSIHK IWLELRDKFP LVPLEVEIAD VRDRFKLQLT FEKHQPHVVF
HAAAHKHVPL MEMHPDEAVK TNVFGTKNVA EMADRVGCER FVLISTDKAV NPSSVMGATK
RIAELVIQNL FKGSHTKFAA VRFGNVLGSR GSVVPIFKEQ IARGGPVTVT HPDMTRYFMT
IPEAVQLVIQ AGAMAEGGEV FLLDMGEPVK IVDLAANLIK LSGFEPGKDI EIKYTGIRPG
EKLFEELLTA EEGSSSTKHK RIFEAKPVEI DEAVLLQELL KLEKREVTEH QEIFGRLLRV
MPELVLYVEG RTA
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