Gene Dred_3001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_3001 
Symbol 
ID4956504 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp3263956 
End bp3264660 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content42% 
IMG OID640182190 
Productlipopolysaccharide biosynthesis 
Protein accessionYP_001114329 
Protein GI134300833 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3944] Capsular polysaccharide biosynthesis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAATGACG ACAAAATAGA GTCGAGAGAT GACTTTGAGG TGATCGATCT AAGAGATATC 
TGGCGCATTA TCAAAAAGGG TAAATGGATT TTAATAAGTC TCCCCTTAAT TGCCATGCTG
ACCAGTGGAA TTATCAGTTT TTTTGTACTT ACCCCCCGCT ATGAGGCATC TACCACTTTA
ATGGTGGGCA AAACCTATTC CGGTCAAGAC GCCATGATGT TGCAATATAA TGATATTTTA
ACGGCTAACC AACTAGTTAA GACCTATAGC CAAATTGCCA AGAGCCGTAC AGTGGTGGAG
AAGGTAATGC AGTCTGAAAA AATAAATACG ACCTATGAGC AATTAAGTCA GAGTATCGAT
GTTAAACCGG TAAAGGATAC GCAATTAATC CAAATAACGG TGGAAGATAT CGACCCGGAG
CGGGCAGCGA GGCTGGCCAA TTTTACCGCA GTTGTTTTTA TTCGTAAAGT TACAGAAATC
ATGAAGGTTG ATAACGTTAA CATTATAGAT CACGCAGTGG TACCCACTTT ACCGGTGAAG
CCAAATAAAA AGTTGAACAT CATCATTGCT GGAGTCGTTG GCTTGATGGT TGCCTTAGGG
ATTGTCTTTT TACTGGAGTT CCTGGATCGA ACCATTAAGA CCGGAGATGA CGTGGAACGT
TACTTAGAGC TTCCCGTGCT GGGGGTTATT CCTAAGATTG AATAA
 
Protein sequence
MNDDKIESRD DFEVIDLRDI WRIIKKGKWI LISLPLIAML TSGIISFFVL TPRYEASTTL 
MVGKTYSGQD AMMLQYNDIL TANQLVKTYS QIAKSRTVVE KVMQSEKINT TYEQLSQSID
VKPVKDTQLI QITVEDIDPE RAARLANFTA VVFIRKVTEI MKVDNVNIID HAVVPTLPVK
PNKKLNIIIA GVVGLMVALG IVFLLEFLDR TIKTGDDVER YLELPVLGVI PKIE