| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_2794 |
|---|
| Symbol | |
|---|
| ID | 4955437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 3028426 |
|---|
| End bp | 3029388 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640181974 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001114123 |
|---|
| Protein GI | 134300627 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATGA AATATAAATG GACATCGACG GGAGTTGGTG TAATTGATAA TCTTGGGGTA
CAGTTTGGAA AGATCATGAG AGGTGCAAAC CAGGGCAGTA TTCAAACCAG GTGGCGGTAT
GCTGAAGTGG GTGAGCGGTT CATAAAATTT ATTGGCCCTG AATTTGGTCT AAAGAAACTC
CAGAATATCC AGGACAAACA TCTTGACGCC TATGCAAAAC ACTTAAAAAA CCTTGGTAAA
GCTGATAAAT ATGTCAAGAA TGAGTTGTCT GGTATTCGGT ATTTACACCG GCAGATTCCC
CAGACCCGAT ATGAGTTAAT GGATGGAACT AAGGCAAACA AACTGTACGG TTTGGGTTCA
ACTCCAGATG GAAGAGCAGA CCGGGCCTGG ACGGATCAGG AAGTAAAGGC AATGGTTAAC
CTTGCCAGGG CGGTCGGTGA AGAAAAGGTT GCTCAGATAA TTGAAGCATC TAGGGCTACG
GGGATGCGCC TTGATGAAGC TGCCAGTTTA AGGCGACATG AGGTAGAAGA TGCACTGCGG
ACGGGAATTC TTAAACTAAC TAATACAAAA GGGGGTCGGC CAAGGAATAT AACTTTATCC
CAGACGGCCC AAGACACGCT AGGACGGTCG ATAATGAAGG TGCCTAGGGG TGAGTATGTA
TTTTGTCCAG TTGGCCGTAG AATACACGAA TTTAAGAAGG GTGTAGAGGA TTTTATTTAT
CTAAATCGGA AGGAGGTTCA ATCACAGGAG CGATTGGCCA CTGGTCATAA TTTGGCCCCA
GGTGAGAAAG GAGCATTAAC CTTTCATGGT TTGCGCCATG CTTTTGCCAG GGAGTTATAT
GCTGAGAAAT TACAGAATGG TTTTACCAGG GAAGCTGCTT TACAGAAGGT TGCAGAAACC
CTGGGACATA ACCGGGCTGA GGTTTCTTTA ATATATATCC TAGATACCAA AGCTATCCGG
TAA
|
|---|
| Protein sequence | MAMKYKWTST GVGVIDNLGV QFGKIMRGAN QGSIQTRWRY AEVGERFIKF IGPEFGLKKL
QNIQDKHLDA YAKHLKNLGK ADKYVKNELS GIRYLHRQIP QTRYELMDGT KANKLYGLGS
TPDGRADRAW TDQEVKAMVN LARAVGEEKV AQIIEASRAT GMRLDEAASL RRHEVEDALR
TGILKLTNTK GGRPRNITLS QTAQDTLGRS IMKVPRGEYV FCPVGRRIHE FKKGVEDFIY
LNRKEVQSQE RLATGHNLAP GEKGALTFHG LRHAFARELY AEKLQNGFTR EAALQKVAET
LGHNRAEVSL IYILDTKAIR
|
|---|
| |