Gene Dred_2693 details

Gene Information

• Locus tag: Dred_2693
• ID: 4956320
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfotomaculum reducens MI-1
• Kingdom: Bacteria
• Replicon accession: NC_009253
• Strand: -
• Start bp: 2918236
• End bp: 2920086
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640181875
• Product: N-acetylmuramoyl-L-alanine amidase
• Protein accession: YP_001114024
• Protein GI: 134300528
• COG category: [M] Cell wall/membrane/envelope biogenesis; [S] Function unknown
• COG ID: [COG0860] N-acetylmuramoyl-L-alanine amidase; [COG3807] Uncharacterized protein conserved in bacteria

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.17431
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTCTTA ATCTAATATA TAAGCGTTTT TTTCGATATG CCGTTCTAGC GGGGTTAGTT 
TTTTCAATTA TGTTTAATCC TGTTGGTGTG AATCAACCGG CCTACGCAAC CCAAGTGGTC 
ATTGTAAATG TTGATAAGCT AAATTTGAGA AGCGGCCCTG ATACCAATAC AGCCATGATG 
GGTCAGGCCA CTAAGGGAAC GAAATTACCT GTTTTAGCTA AAAACGGGGA TTGGTATAAA 
GTCCAGATAG GCGGGAAAAC TGCCTGGGCC GCTGGTTGGC TGGTGAGTGT AAAGGATACC 
CCGGGGAAAT CTGCGCCGGC GAAAGCCCCT GAAGGAACCC CTGCCGTAAA CAGTGGCAAA 
GTGGCAGTGG TGAAGGGGGA TAATCTGAAT ATAAGAAGTG GCCCCGGTAC CACGTATGGT 
ATTGCAGGAA AAGTAAAAAA GGGTGACCGG CTTACTGTTC TGACTCAGAA GGGCGACTGG 
ATTAAAGTAC AAGGGGCCAA TGTTACCGGC TGGGTGGCTA GTTGGTTAGT AGCAGTAGAA 
AACAAGCCCA CTGCTCCGGC ATCGGTTACT TCGCCAACAA TTGCCAAGCC TGCTCCCGCT 
GGTCAAGTTG TGGTCATCAA TTCAGATAAT TTGAATTTGC GTAGTGGCCC AGGAACTAGC 
CACAGTGTGG CAGGTCAGGT CAGCAGGGGG ATTCGCTTAC CTATCATCAG CCGATCTGGC 
CAATGGTTAC AAGTACGACA GGCCAATGGT TCAACGGCAT GGGTGGCAGG TTGGTTGGTA 
TCGGTGGTGG ATCAACCGGA ACCTCTGGAA CCCCAGAAAC CTCAACAACC ATCCCAACCT 
TCTCAACCCA GTACAGAGGA TAATAGCTGG CTACCAGGCT TAACACCAGC TAGCAGTGAA 
CAAACCGGTG GAAGTTCAGA TACGGAGGAA AACAAAAATG TTCCCAAGGC AAAATTGGTG 
GATATAGAGG TAAAAGAAAA AGAAGATCAC ACCTACATAA ATATTGTCAG TGACAAGAAA 
ATTAATTATA ATACCTTTCC TTTATCCAGC CCTTCTCGCT ATGTGGTAAA TTTAAGTGAT 
GTTTATCTAG ACAATACTCC GGAAACCATT TCTGCTAATA CTGAACTGGT TGGTCAAATA 
AGAACCGGCT ATAATCAGGA CCCCTATTAC TCACGGTTGG TCGTTGATCT AAAGGAACGG 
GCCAGGGTAA AGGTGAGTCT GTCTGAGGAT AAAAAATCAT TAACCTTAGA TATTAGCAAA 
ATCTCCTACA GCGATGGCAT AAAGGGTAAA ACAGTATTTC TTGATGCCGG TCATGGTGGT 
CACGATGGCG GCGCATCTGG TCAGAATGGT TTAAAAGAAA AGGATGTAAA CCTGGACATT 
ACTTTAAAAG TAGCTGAATT ACTGAGAAAA CAAGGGGCCA ATGTATTTTT GAGCCGTTCC 
GATGACAAGT TTGTTGACCT GTATGAAATT ACCCGGTTGG CCAATGAGCA AAGTACTGAT 
ATTTTTGTAA GTATTCACAG CAATGCTAAT CTAAACCGAT CGATTGATGG AACATCTACC 
TATTATTATG CCCCTAACAA CATGCCTAAT CTATACGAAC AAAAGGATGA TCGTTACCGG 
CTGGCTAGGA ATGTTCAAAA TGAGCTGACG GCTGCCCTAG GAAGGCGTGA TATTGGCGTA 
CTACAAGCAA ATTTTGCCGT ATTGCGTACC AGTATGATGC CCAGTATTCT CATTGAGACA 
GCCTTTATTT CAAACTCCGA CGAAGAAGCG TTGCTTAGTT CCGAAGACTT TAGAGAAAAA 
GCAGCAGAAG CCATTGTTAA AGGGATTAAT GCATATTTTT ATGGACAATA A 

 

Protein sequence

MILNLIYKRF FRYAVLAGLV FSIMFNPVGV NQPAYATQVV IVNVDKLNLR SGPDTNTAMM 
GQATKGTKLP VLAKNGDWYK VQIGGKTAWA AGWLVSVKDT PGKSAPAKAP EGTPAVNSGK 
VAVVKGDNLN IRSGPGTTYG IAGKVKKGDR LTVLTQKGDW IKVQGANVTG WVASWLVAVE 
NKPTAPASVT SPTIAKPAPA GQVVVINSDN LNLRSGPGTS HSVAGQVSRG IRLPIISRSG 
QWLQVRQANG STAWVAGWLV SVVDQPEPLE PQKPQQPSQP SQPSTEDNSW LPGLTPASSE 
QTGGSSDTEE NKNVPKAKLV DIEVKEKEDH TYINIVSDKK INYNTFPLSS PSRYVVNLSD 
VYLDNTPETI SANTELVGQI RTGYNQDPYY SRLVVDLKER ARVKVSLSED KKSLTLDISK 
ISYSDGIKGK TVFLDAGHGG HDGGASGQNG LKEKDVNLDI TLKVAELLRK QGANVFLSRS 
DDKFVDLYEI TRLANEQSTD IFVSIHSNAN LNRSIDGTST YYYAPNNMPN LYEQKDDRYR 
LARNVQNELT AALGRRDIGV LQANFAVLRT SMMPSILIET AFISNSDEEA LLSSEDFREK 
AAEAIVKGIN AYFYGQ