| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_2570 |
|---|
| Symbol | |
|---|
| ID | 4958634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 2798197 |
|---|
| End bp | 2801151 |
|---|
| Gene Length | 2955 bp |
|---|
| Protein Length | 984 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640181753 |
|---|
| Product | SMC domain-containing protein |
|---|
| Protein accession | YP_001113905 |
|---|
| Protein GI | 134300409 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0419] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGGTGC AAAGGGTAAG ATTGAAGAAT ATAAAAAGCT ACGGTGAGGG GGAAAAGGGT
CAGGGTGTTA CCATCCACTT GGAACCCGGT ATCAACCAGA TTGCCGGAAA GAATGGGGCA
GGCAAGAGTT CTCTTATCGA AGCTATCGGT TATGCTCTTT TCGATGCCGA GCCCCTGCGG
GGAAATACAA GGATTGCAAA GAATACATAC CTATTAAGAA ACGGCTGCAA AGCCGGGGAA
GTTGATGTGT GGTTCTGGCA TGAAGATTGT CTTTACAGGG TGGAACGGGA CGTGGGTAAT
GGTGGCAGAC GCTGGAAAGT GATACGGCAG GATGATGATT TTATTGAGGC AGAAGGGGAA
AAAGAAGTAA AAGATTTTCT CGCCCACATG GCGGGGGTGG AAAACCCTGA CCGGCTGGCA
GAAGTGTACC ATAGCCTGCT GGGTGTTAAG CAGGGGAGAT TCACCATACC CTTTGACTTA
AAGCCCAGCG AAGCGAAAAA TCACTTTGAC CCACTGCTGG ATGTGGATAT TTTCCGACAG
TGTTTTGAAG TTCTGAGGGA ACCCTGTAAT GGGATTCGTC AGGATATGGC TAGCCTGCGG
GCTGTTATTA GTGGTCTGGA AGGGCAAATA TCACAAATAC AGGATGCACC GGAAAAGTTG
GAAGAGGGAG TTAAGCAAAG GACCACCTTA GAGATATTGG TGGAAAAATG CCAGGAACAG
CTTAAGCAAG CCGCCGGGCA ATTGGAACAG TATGACGCTC TGATGAACAC TTATCAGTCG
GCTATGCTGA AGGTCAGTGA GGCCAGAAAT CTTGTGGCAC AAGCCAATGC CGATGTAAAC
ACCTCTACGG TCAGGGTTGA AGAGGCTAGG CAGGCAGGTA AAATCTTGCA GCAAAATCAA
TTGGACTTTG AAGCCTATAC CCAACTGGAA ATGCAGATTG CGGAACTGGA AAAACAACGG
CTTAGACGGG ATCAAATGCA AAAGAAACTG ATGGACCTGC AGCGGGAAGA AACAGGTATG
GCCAAGGACC TGGAAGCCAG AAGGCTTGAG GCCCAGCGGG ATCGGGAAAA TGCAGTCTCA
AAGGAGCTGG ATTATCAACC AAGAATAGAA AAACTTGGCT GGAACCTAGA GCAGTACCAA
GGGGGAGAAG AGGCTTGCCA ACGGTCGTAC CGTCAGGCAG AGGACTTACG TACCAACCTG
ACCGCTGTTG TGGAATGGCT GCGGGGTATG AGTGCCATCA ACAAACCGGC CATTGAACAA
CTAACGGATT TAGAACAAAT CCTCCAGCAG TTGGATCAGC ATATGGCGGG GCAGTTGGTT
AAGGCGAAGG AGGAATTGGC AAAGGTCGAA AGCCAAGAGC AGTCATGTCG TTTGCTTTTA
GAAAGAACCA GACAGGATAA GATCACTTTA GAGCAGCAAC TGGCTAGGCT TTCCGGTGGG
CAATGCCCTT TGTTAGGGAC CTCCTGTAAC CAGTTCGATC CGGCTAAGGC CAGAGAAGAT
TTGGCCCTTT TGAATGGAAA GTTACAGCAG GCAGCAGTGG AACATAAGGA AAAATTAGAG
CAACTTTCGC TGGCTAGAAA TCAGGTGGAA AAATGCCTGG CAGCGGAGAA AACCCAGTTG
GAGAAACTGG CCCGGGCCAG CCAGCTGGCT AAGGGTATTA CAGGGTTATA TGGACAAATG
GAGGATGCCA AAGGCAGGAC TGCAGCCGAG AACCTTGCCC AAGTTTTAAA ATTAGGGGGA
GAGCTTGCCA GACTGGAAAC ACTGGCAGAA ACCAAAGATT TATCTGCCAA TTACTTCCAA
ACACTGATAG GGAGGATGAA GAACTTCCAG ATGGCGCTCT ACCAGCGGTA CCAGCTTTGG
CAGCCAGCTG TCGAGTCACA GTATAAGATG GCACAGGCAA TGCTGACCCA ACGTGTGGGA
TATAAGAAGG AGTTGGCAGC GGAAGAAACC GCCCTTAAGG TCCTCTGGGA GGAGATCAAA
CGACTCCAAC AATCGGCCGA GAACGCGGAA AAAAAGGCAC TTCACATCGA GACCGGGCTT
AAGGGGGTAA GGCATCAAAT TAAGGATATG GAGCAACAAC TGGCACCCTT TCACGGTCTT
GATAACAAAC TGGCCGAAGC CACAGCAAAC AAAACATGTC ACCTACCGGG ATACACCCTT
TACCTACAAA ACCAGCCTGT GGCCGAGAAA TATGAGCTAT ATTTGAATAG CTTAGAAGAG
TGTAAAAAGA AACGAAAGAC CCTGGAGATT GAACTACTGC AAGCCGAGCA AAGATTTAAG
GAAGCCGAAG CCGCTTATAG CCCAGAAAAG CATAAAGAGC TAAAAGCAAT CTATGCCCGG
GCTAACCTTG ACCTGGGTGA AGCCACCAGT AAACTGGCGG AAGCTGTCCG GTGGGTGGAG
GAACAACGCA AACGGGTTGA GGTTATGGAT AAATTGCTCC TGCAGCGGGA TCAGCAATAT
AAGGAATGGG TCCGTTTGCA GGCACAGGAA AATATTTTGG AGAAGGCACG GTATATTTTG
AAAAATTCCC AGGAACCCGT GGCCCGTAAC CTTACCTCCC GGGTGGCTGC CCAGGCCCAA
ACCATCTATA ACACCATGAG TAGTGAAGCG GCTCAGTTTA ACTGGCGGTC CGGAGATTAT
ACCCTTTATG TGACCACCGT ATCCGGGGAG AAGCGGTTTG CCAGCTTATC CGGCGGACAG
CAGATGAAAG CTGCTTTGGC CATGCAATTG GCGATGGTAA AGGAATTTTC CCGGGCGGGT
TTCTGTGCCT TTGATGAACC TACCTACGGT CTGGATGCAG AAAGCCGCTC TATGCTAGCA
GAGGCCATTG GTAAGGCCCA GGAGGAATGT AAGTTTGAGC AGCTTTTATT GGTATCCCAC
GACCAGGCCT TTGACGATAA AGTGGAGCAT GTCCTAAATC TGCAGTACTT ACCTATGGAA
GGGACGAAAC TGTAA
|
|---|
| Protein sequence | MWVQRVRLKN IKSYGEGEKG QGVTIHLEPG INQIAGKNGA GKSSLIEAIG YALFDAEPLR
GNTRIAKNTY LLRNGCKAGE VDVWFWHEDC LYRVERDVGN GGRRWKVIRQ DDDFIEAEGE
KEVKDFLAHM AGVENPDRLA EVYHSLLGVK QGRFTIPFDL KPSEAKNHFD PLLDVDIFRQ
CFEVLREPCN GIRQDMASLR AVISGLEGQI SQIQDAPEKL EEGVKQRTTL EILVEKCQEQ
LKQAAGQLEQ YDALMNTYQS AMLKVSEARN LVAQANADVN TSTVRVEEAR QAGKILQQNQ
LDFEAYTQLE MQIAELEKQR LRRDQMQKKL MDLQREETGM AKDLEARRLE AQRDRENAVS
KELDYQPRIE KLGWNLEQYQ GGEEACQRSY RQAEDLRTNL TAVVEWLRGM SAINKPAIEQ
LTDLEQILQQ LDQHMAGQLV KAKEELAKVE SQEQSCRLLL ERTRQDKITL EQQLARLSGG
QCPLLGTSCN QFDPAKARED LALLNGKLQQ AAVEHKEKLE QLSLARNQVE KCLAAEKTQL
EKLARASQLA KGITGLYGQM EDAKGRTAAE NLAQVLKLGG ELARLETLAE TKDLSANYFQ
TLIGRMKNFQ MALYQRYQLW QPAVESQYKM AQAMLTQRVG YKKELAAEET ALKVLWEEIK
RLQQSAENAE KKALHIETGL KGVRHQIKDM EQQLAPFHGL DNKLAEATAN KTCHLPGYTL
YLQNQPVAEK YELYLNSLEE CKKKRKTLEI ELLQAEQRFK EAEAAYSPEK HKELKAIYAR
ANLDLGEATS KLAEAVRWVE EQRKRVEVMD KLLLQRDQQY KEWVRLQAQE NILEKARYIL
KNSQEPVARN LTSRVAAQAQ TIYNTMSSEA AQFNWRSGDY TLYVTTVSGE KRFASLSGGQ
QMKAALAMQL AMVKEFSRAG FCAFDEPTYG LDAESRSMLA EAIGKAQEEC KFEQLLLVSH
DQAFDDKVEH VLNLQYLPME GTKL
|
|---|
| |