| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_2449 |
|---|
| Symbol | |
|---|
| ID | 4955961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 2664192 |
|---|
| End bp | 2664845 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640181621 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001113784 |
|---|
| Protein GI | 134300288 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0190416 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAA CAATACTATT TGATTTGGAT GGCACACTCC TGGATTCACT GCCTTTAATT
AAGAGGACCT ATAAGAGGGT CTTTCAAGAA ATGAATATAC CCTGGGCTAA CGGCGAGGTC
ATGAAATGTA TTGGATTGCC GCTGGTTGAT ATCGGTAAGA AGTTTGCCGG AGAGGAAAGG
CACGCAGAAT TTTTTAGTTT ATACCAGCAG CATTATGCCA TCGAGCACGA TGCCATGACA
AAAGCCTACC CCGGTACCAT GGAAATGCTA GAAGACCTGC ACCAAAGAAG TCTTCGCCTG
GGCGTGGTTA CTTCCAAATC CCGCCGAGTT GCATTGAGAA GCACAGGGTT TTTAGGAATT
GATCGCTACA TGGATGTTCT GATCGGTGTA GAGGATGTGG ACCGTCATAA GCCTCAGCCA
GACCCTATTT TTAAAGCCCT GGAACAAATG CAAGTGCCTG CAGAAGGTGC CGCTTACATC
GGGGATAGCC CCTTTGACAT TATGTCTGCC AAAGCTGCCG GCGTAACTTC CATCGGCGTT
AGCTGGGGAA TGGCAGAGGG TGATGAACTC CTGCGCTTTG AACCGGATTA TCTTCTAAAC
CAATGGTCAG ATTTATTGTT AGTACTGGAA AATGATACCG AATTAATGGA CTAA
|
|---|
| Protein sequence | MIKTILFDLD GTLLDSLPLI KRTYKRVFQE MNIPWANGEV MKCIGLPLVD IGKKFAGEER
HAEFFSLYQQ HYAIEHDAMT KAYPGTMEML EDLHQRSLRL GVVTSKSRRV ALRSTGFLGI
DRYMDVLIGV EDVDRHKPQP DPIFKALEQM QVPAEGAAYI GDSPFDIMSA KAAGVTSIGV
SWGMAEGDEL LRFEPDYLLN QWSDLLLVLE NDTELMD
|
|---|
| |