| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_2348 |
|---|
| Symbol | |
|---|
| ID | 4956624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 2567926 |
|---|
| End bp | 2570118 |
|---|
| Gene Length | 2193 bp |
|---|
| Protein Length | 730 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640181520 |
|---|
| Product | ATP-dependent DNA helicase PcrA |
|---|
| Protein accession | YP_001113683 |
|---|
| Protein GI | 134300187 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01073] ATP-dependent DNA helicase PcrA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0164573 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATTT TATCGCAATT GAATCCTGCC CAAGAAGAGG CGGTACAACA TACGGAAGGC
CCCCTGTTGG TACTGGCAGG TGCTGGCTCC GGTAAGACCA GAGTGCTGAC ACATCGAATT
GCCCAAATTC TCAGCCAAGG AGTTCGGCCC TATAACATTT TAGCCATCAC CTTTACCAAT
AAGGCTGCTA ATGAAATGCG AGCAAGGGTA GAAAATTTAG TACCCCAAGC AGCCAAGGAC
CTTTGGGTAA CTACCTTTCA CAGTGCCTGT CTGCGTATCC TCAGAAGAGA AATCGATGTT
ATGGGCTATG GTTCTAACTT TTCCATTTAC GACGATGCTG ATCAACAAAC TGTCATCAAA
GAATGCCTAA AGGAATTAGA AATTGATGAA AAAAGGTTTC AACCCCGGGC TATGCTGTCA
GCGATCTCAG GAGCAAAGAA CAAGCTTCAG ACACCGGCCC AATATGATCG TCAGGCCTTT
GAATATTTTG AACAGGTAGC TGCCAGGGTC TATCGCCTGT ACCAGGAAAA ACTATTTAAA
AATAATGCGG TGGATTTTGA TGACCTAATC ATGTTAACAG TGCGTTTGTT TAAGGAAAAC
CCAGATGTCC TAGCCTATTA CCAAAATAAA TTTAAATATA TTTTGGTGGA TGAGTACCAG
GACACCAACC ATACTCAGTA TGTTTTGGTG AACATGCTGG CAGAAAGTCA TCGCAATGTT
TGTGTGGTAG GTGATCCCAA CCAGTCTATT TATAAATGGC GGGGAGCCGA TATTAACAAC
ATTCTGGACT TTGAACGGGA CTATCCCGAG GCAAAAGTGG TCAAACTGGA ACAAAACTAC
CGTTCCACCG GTAACATTCT ACAGGCTGCC AATGCTGTTA TTAAAAACAA TGCTGAGGCT
AAGGATATGA AACTCTGGAC CTCCAAAGGG GAGGGTAATC GAATTCATAT CTACCGGGCA
GAGAACGAAC GCTTTGAGTC TATGTACATT GCGGACCGTG TTAAAGATTT GCGTTTCTCC
CATAACCGCA AGTATCGTGA TATGGTCATA CTCTACCGGA CCCATGCCCA ATCCCGTGTT
TTTGAAGAAG TTTTTCTTCG TCAAGGCATT CCCTATAGTA TCTTTGGTGG GCAGAAGTTC
TATGACCGTA AAGAAATTAA AGATCTTCTT TCCTATTTAA GAGTAATTGC GAACCCTGTA
GACAGCCAGA GCCTGTTGCG TATAATTAAC GTACCCAAAA GGGGAGTGGG GGCTGCATCC
ATTGAAAAGC TGACCAACTT TGCCACAGAA AGAGATCTCA CTGTCTTAAT GGCTCTGGCT
CTGGTGGATG ATATTCCTGG TGTGCCGGCT AAAGCCCGCA AGCAATGTAG AGAACTGGCA
GACAACCTTG CCAGTTTGAA GAAACAGGTG GAGTTCCTTT CTGTAACGGA GATCACCGAA
GAGGTTCTAA ATCGCACTGG CTATAAGGCT GAACTGGAAC TGGAAAATAC CGTTGAGGCC
AGAACCCGCT TGGAGAACTT GCAGGAATTC CTCACGGTTA CAAAAGAATA TGATAAACAA
CAGGGGGAAG AAACCGGGGG GCTGGCGGAT TTCCTTTCTA CCATTTCCCT GGTAACCGAT
TTGGATCGGC ACGACCCCCA AGCAGATCAA ATTACTTTAA TGACACTACA CAGTGCCAAA
GGGCTGGAAT ATCCGGTAGT CTTTTTAACC GGCATGGAAG AAGGCGTGTT CCCCCACAGC
CGGGCCCTTT ACGACGAAGA GGAACTGGAG GAGGAACGTC GACTGGCCTA TGTGGGTATT
ACCCGGGCTG AAGAAGAACT ATACATTACC CACTGTTGGG AAAGAACCCT GTTTGGGCGT
ACCAACATGA ATGCCAAATC CCGCTTCTTA GAGGAAATAC CCCTAGAACT GACCGTTGGC
CAATCCCCTG TTAAAAAGCT AGCTGCGGGA TCCGGGCTTA TAAAATCCAG TTTATTTAAT
AAAACCGGTA CAATAGCGAC CCAAGCCCCA GCCGCCCCTG CGGCAGTTCC TAAGAGTTAT
TTACTGGGAG ACAAAGTTCG GCATGCCAAA TGGGGTGACG GGGTTATCGT GAAAGTAAAG
GGCAATGGCG GTAATGCAGA AATTACTGTG GCATTTCCTG AAATGGGCCT AAAAACCCTG
ATTGCCCAGT ATGCACCACT GGAAAAGATC TAA
|
|---|
| Protein sequence | MNILSQLNPA QEEAVQHTEG PLLVLAGAGS GKTRVLTHRI AQILSQGVRP YNILAITFTN
KAANEMRARV ENLVPQAAKD LWVTTFHSAC LRILRREIDV MGYGSNFSIY DDADQQTVIK
ECLKELEIDE KRFQPRAMLS AISGAKNKLQ TPAQYDRQAF EYFEQVAARV YRLYQEKLFK
NNAVDFDDLI MLTVRLFKEN PDVLAYYQNK FKYILVDEYQ DTNHTQYVLV NMLAESHRNV
CVVGDPNQSI YKWRGADINN ILDFERDYPE AKVVKLEQNY RSTGNILQAA NAVIKNNAEA
KDMKLWTSKG EGNRIHIYRA ENERFESMYI ADRVKDLRFS HNRKYRDMVI LYRTHAQSRV
FEEVFLRQGI PYSIFGGQKF YDRKEIKDLL SYLRVIANPV DSQSLLRIIN VPKRGVGAAS
IEKLTNFATE RDLTVLMALA LVDDIPGVPA KARKQCRELA DNLASLKKQV EFLSVTEITE
EVLNRTGYKA ELELENTVEA RTRLENLQEF LTVTKEYDKQ QGEETGGLAD FLSTISLVTD
LDRHDPQADQ ITLMTLHSAK GLEYPVVFLT GMEEGVFPHS RALYDEEELE EERRLAYVGI
TRAEEELYIT HCWERTLFGR TNMNAKSRFL EEIPLELTVG QSPVKKLAAG SGLIKSSLFN
KTGTIATQAP AAPAAVPKSY LLGDKVRHAK WGDGVIVKVK GNGGNAEITV AFPEMGLKTL
IAQYAPLEKI
|
|---|
| |