Gene Dred_2346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_2346 
Symbol 
ID4956696 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp2564983 
End bp2566995 
Gene Length2013 bp 
Protein Length670 aa 
Translation table11 
GC content50% 
IMG OID640181518 
ProductDNA ligase, NAD-dependent 
Protein accessionYP_001113681 
Protein GI134300185 
COG category[L] Replication, recombination and repair 
COG ID[COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) 
TIGRFAM ID[TIGR00575] DNA ligase, NAD-dependent 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCAGATT TAAGCCAACA AAGCAAGGCC CGGGTGGAAG CACTGCGCCG GGAGATAAAC 
CATCATAACT ACCAGTACTA TGTACTGGAT CAACCTACTA TTACTGACGC CCAGTACGAT
CAATTAATGC AGGAATTACT ACGGCTGGAG GAGCGTCACC CGGAGTTGGT AACCCCCGAT
TCCCCAACCC AGCGGGTTGG GGGGCAGGTG CAAAGGGGTT TTTCTTCTGT ACCGCATAAA
ATACCGATGC TAAGTTTAGG CAATGCCTTT GGTGAAGGGG ATTTGCGGGA ATTTGATCGG
CGTGTTCGTT CCTATCTGCC CGGTGAAGAA GTAAAATATG TGGTGGAGCT TAAAATCGAC
GGCTTGGCCA TTTCTCTCTG GTACGAGAAG GGCCTGCTGG TCAGGGGTGC TACCCGGGGA
GATGGCGAAC TGGGAGAAGA TATTACCATT AATCTAAAGA CCATCAGGGC CATTCCTCTG
CGGCTAACGC AGGAAGTTCC CTTTCTAGAG GTCCGGGGCG AAGCCTATAT GCCCAAGGAT
TCCTTTGTAC GACTTAATGA AGCCCGGGAG GAAGCCGGGG AACCGCTCTT TGCCAATCCA
CGCAATGCGG CGGCAGGTAG TCTACGCCAA TTGGACCCTA AAATTACGGC CGCCCGCAAC
CTGAGTGTGT TTATGTATGC CATCGGTTAC ATAGAAGGAG CTAAGCCCCC AAGCCATGCA
GAGAGCTTGG CCTGGTTAAA GGAACTGGGA ATTCGCATTA ACCCGGATCA TCAAGTGTGC
GGCAGCATCG ACGAGGTTAT TGACTTTATC AGCCAGTGGC AGGCTAAGCG TTACCAGTTG
CCCTATGCCA TTGATGGCAT GGTAATCAAA GTGAACTCAT TGGAGCAACA GCAGCGGCTG
GGTACAACCA TGAAAAGTCC CCGCTGGGCC ATCGCCTATA AATTTCCCGC TGAGCAAGCC
GTCAGCACCA TTAAGGATAT CATCATACGG GTGGGACGTA CCGGTGTATT AACCCCCACA
GCCATCCTGG AGCCGGTTCA ACTGGCGGGC ACCACCGTTA GTAAAGCCAC CTTGCATAAT
GAAGATATTA TTCGCCAGAA GGATATCCGT ATTGGAGATA AAGCCCTGGT GCAGAAAGCA
GGGGATATTA TCCCGGAAAT TGTTCAGGTA TACCCTGAAA AACGAACTGG TAATGAAGTT
CCTTTTATCC TACCTGTTAC CTGCCCGGAA TGTGGTGCAG AGGTAGTTCG TGTGGCAGGA
GAAGCGGCTC ACCGCTGCAC CAATGAAAAC TGTTCAGCCA AATCCCGGGA GGGCATTATC
CACTTTGTTT CCCGCAGTGC TATGGATATT ATGGGGCTGG GGGAAGGCAT TGTGAACCAG
CTTATTAAAG GCGGACTGGT GAAGGACCCT GCGGATCTCT ATGATCTGAA ATATGAGGAT
CTAATTCGGC AGGAACGAAT GGGAGCCCGG TCTTCTCAAA AACTGCTGGC TGCCATTGAA
GCCAGTAAAA ATAATTCCCT GGGTCAGCTT CTGTTTGGTC TGGGCATTCG CCATGTGGGT
GAGCGAGCAG CTAAAATTCT GGCCCGCCAA TTTGGTTCTA TGCAAGCTCT GATGCAAGCA
ACGGCGGAAG ATTTAACCGG CATTTCGGAA ATTGGTCCTC GTATTGCCGA AAGTATAATG
GAATATTTTT CCAGGCAGGA GAACCAAGGT TTGATAGAGC GGTTGTCCAA GGCCGGTGTG
AATATGTTGG AAGAGGTTGA ACAGACAGAG TCCACTGATC AGACTTTGAG CGGTAAAACC
TTTGTGGTAA CTGGCACACT GGAAGGTTTT TCCCGGCAGG AAGCTCAAAG GGCTATTGAG
GAACGGGGCG GTAAAGTTTC CGGCAGTGTC AGTAAAAAAA CCAACTATGT GGTGGTGGGA
GAAAACCCTG GTTCCAAGCA TGATAAAGCA CGGCAGTTGG GGATTACTAT ATTAACTGAG
CAAGACTTTG TTAAACTATT GCAGCAGCAA TAA
 
Protein sequence
MADLSQQSKA RVEALRREIN HHNYQYYVLD QPTITDAQYD QLMQELLRLE ERHPELVTPD 
SPTQRVGGQV QRGFSSVPHK IPMLSLGNAF GEGDLREFDR RVRSYLPGEE VKYVVELKID
GLAISLWYEK GLLVRGATRG DGELGEDITI NLKTIRAIPL RLTQEVPFLE VRGEAYMPKD
SFVRLNEARE EAGEPLFANP RNAAAGSLRQ LDPKITAARN LSVFMYAIGY IEGAKPPSHA
ESLAWLKELG IRINPDHQVC GSIDEVIDFI SQWQAKRYQL PYAIDGMVIK VNSLEQQQRL
GTTMKSPRWA IAYKFPAEQA VSTIKDIIIR VGRTGVLTPT AILEPVQLAG TTVSKATLHN
EDIIRQKDIR IGDKALVQKA GDIIPEIVQV YPEKRTGNEV PFILPVTCPE CGAEVVRVAG
EAAHRCTNEN CSAKSREGII HFVSRSAMDI MGLGEGIVNQ LIKGGLVKDP ADLYDLKYED
LIRQERMGAR SSQKLLAAIE ASKNNSLGQL LFGLGIRHVG ERAAKILARQ FGSMQALMQA
TAEDLTGISE IGPRIAESIM EYFSRQENQG LIERLSKAGV NMLEEVEQTE STDQTLSGKT
FVVTGTLEGF SRQEAQRAIE ERGGKVSGSV SKKTNYVVVG ENPGSKHDKA RQLGITILTE
QDFVKLLQQQ