| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_2163 |
|---|
| Symbol | hemC |
|---|
| ID | 4956247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 2367344 |
|---|
| End bp | 2368273 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640181339 |
|---|
| Product | porphobilinogen deaminase |
|---|
| Protein accession | YP_001113505 |
|---|
| Protein GI | 134300009 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0181] Porphobilinogen deaminase |
|---|
| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.138876 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACATA AAATAACCGT TGGCAGCAGG GACAGTGCGC TGGCACTGTG GCAAACTCGC
TGGGTAGTTG AACAGCTGGA AAAACAAAAC CCTGATGTTA CCTTTGAAAT TACAACCATG
AAGACTAAGG GAGACAAAAT GTTGGATGTG GCCCTGGCCA AAATTGGGGA TAAAGGTCTA
TTTACCAAAG AATTAGAAGT GGCTATGTTG CAGAAGGAAA TCGATTTTGC AGTGCATAGT
CTGAAGGATA TGCCCACTGC TTTGCCAGAA GGCTTAATCA TTGGTGCAGT ATGCAAGCGA
GATAACCCCG GCGATGCACT GATTTCCAAG GATGGACGGA AATTAGATGA GCTTCCTAAG
GGTGCTAGAA TCGGTACATC TTCTTTACGC CGCTGTGCGC AGTTATTAAA CTACCGTCCG
GATTTTCAAC TGGAGGCCCT ACGGGGTAAC CTGAATACAC GTATGAAAAA GTTGGTGTCC
GAGCAACTAG ATGGCATTAT TCTGGCTGCA GCGGGCATAA CCCGCATGGG CTGGGAAGAT
ATGATTGCGG AAATTATTCC CTTTCAGGTT TGTCTACCGG CAGTGGGACA GGGTGCCATT
TCTGTGGAAT GTCGGGAGGA CGATCCAGAA ATTCTTAATC TACTTAAAGG TATTGAACAT
ACAGAGACCA AAGCTGCCAC TGAAGCAGAA AGGTCATTAC TCCGTTACTT AGAAGGCGGT
TGCCAGGTGC CCATTGGAGC CCACAGTGAA GTTAAGAATA ATAGGCTTAT GCTCACCGCT
GTTGTGGCCA CCCTAGATGG GACTAAAGTT ATTCGGGCCC AAGGAGAGAA CGAGGTTAAC
AAGGCGGTGG AATTAGGTAT TGAAGTGGCT GAGAAACTAA TGGCAATGGG CGGTAAAAAA
ATACTGGAAG AAGTTAGGGC GGGGGAATGA
|
|---|
| Protein sequence | MKHKITVGSR DSALALWQTR WVVEQLEKQN PDVTFEITTM KTKGDKMLDV ALAKIGDKGL
FTKELEVAML QKEIDFAVHS LKDMPTALPE GLIIGAVCKR DNPGDALISK DGRKLDELPK
GARIGTSSLR RCAQLLNYRP DFQLEALRGN LNTRMKKLVS EQLDGIILAA AGITRMGWED
MIAEIIPFQV CLPAVGQGAI SVECREDDPE ILNLLKGIEH TETKAATEAE RSLLRYLEGG
CQVPIGAHSE VKNNRLMLTA VVATLDGTKV IRAQGENEVN KAVELGIEVA EKLMAMGGKK
ILEEVRAGE
|
|---|
| |