Gene Dred_2117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_2117 
Symbol 
ID4955785 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp2313672 
End bp2314643 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content45% 
IMG OID640181287 
Producttype II secretion system protein 
Protein accessionYP_001113459 
Protein GI134299963 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4965] Flp pilus assembly protein TadB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.215511 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACACTTG AGCAGATTGC CCTGACAATC TTTATTTCCG GAAGCCTGCT GGTTCTGGGC 
ATTCACCGGA TTCGTTCCAA AGATAGCCTG GAAATCAGTC ATCGCATGAA TAAAATTACA
GCAAAAACCT TTCGCCAGCG TCTGGCTCAA AGCGACAGTG AGGAAACCCC AAAGGAAGGT
TGGCGGGGAC TCCTTAACCC TTTTTCAAAA ATTTTTGCCA AACAAAGTTT TAGTAAACGT
ATGGAAATTG AGTTAACAAA AGCAGATATT CCCTTAAGGG GGGAAGAATT TATTGTTCTG
CTCCTCTTGA CCGGTTTTGG GTGCTCCCTT TTCTTTACGT TACTGACCCT GAACCTGGCC
TTTGGGGTTG TAGCTGGCTT ATTGGGCTTA ATCGTTCCCT TCTTGTTTAT TCGCATAAAA
CGTCAAAAGA GGCTGGCAAA ATTCAACTCC CAGATTAGCG ATGCCCTGGT AATTATGTCT
AACTCCCTCC GGTCAGGCTT TAGCTTTCTG CAAGCAATGG ATATGGTTCG CAAGGAACTG
CCCAACCCTA TTTCCAAAGA ATTCGGACGC ACCTTTCAAG AAATGAATCT TGGTACCCAA
GCTGAAGAAG CTTTAGAGAA TATGGCCCAG CGAGTGAAAA GCGATGATCT GGATTTATTA
ATCACAGCCG TCCTCATCCA ACGTCAGGTG GGTGGTAATC TAGCCGAAGT TATGGATAAC
ATTGCCGATA CCATTCGTGA GCGGGTAAGA GTCAAAGGCC AAATTCGGAC CCTAACCGCC
CAGGGACGTA TTTCCGGATT CGTCATCGGC CTTTTACCCT TTGGCCTAAC AACGGTCATG
ATAACCATTA GCCCCAGCTA CATTCTGACC CTTTTTAACA GCCAGCTTGG ACTGCTCATG
ATGGGAATGG CCATTATTTC GGAAGTCATC GGTGTTATGT TCATTAAAAA GATTGTTAAT
ATCGAGGTGT AA
 
Protein sequence
MTLEQIALTI FISGSLLVLG IHRIRSKDSL EISHRMNKIT AKTFRQRLAQ SDSEETPKEG 
WRGLLNPFSK IFAKQSFSKR MEIELTKADI PLRGEEFIVL LLLTGFGCSL FFTLLTLNLA
FGVVAGLLGL IVPFLFIRIK RQKRLAKFNS QISDALVIMS NSLRSGFSFL QAMDMVRKEL
PNPISKEFGR TFQEMNLGTQ AEEALENMAQ RVKSDDLDLL ITAVLIQRQV GGNLAEVMDN
IADTIRERVR VKGQIRTLTA QGRISGFVIG LLPFGLTTVM ITISPSYILT LFNSQLGLLM
MGMAIISEVI GVMFIKKIVN IEV