Gene Dred_2100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_2100 
Symbol 
ID4956094 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp2297788 
End bp2299773 
Gene Length1986 bp 
Protein Length661 aa 
Translation table11 
GC content44% 
IMG OID640181270 
Product1A family penicillin-binding protein 
Protein accessionYP_001113442 
Protein GI134299946 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACGGC CAAAGCTATT TCTCCTATTG GTGAGTTTCA TTATTATATT CAATATCACG 
TCCGGTTGTG CGGACATTGG ACAAAGGGAA CCTCCGGATG TACCAACACC TTCTAGGATA
GTGGATGTCA ATAATAAATT AATTACTACC ATATCTCAGA CCAATCAAAT TCCAGTTGAA
TTGGACCAGA TTGCTCCAGA AATGCAACAA GCCATTGTGG CCATTGAAGA TTATCGTTTT
TATGAACATT CTGGCATTGA TATAAAGGGA TTGGCACGGG CGGCTCTCAT AAATATACGT
AACCTTCGTA TAGTGGAGGG TGGCAGTACT ATTACCCAGC AATTGGCAAA GAATTTGTAT
TTGGGGCCTG AACGTACCCT AGGAAGAAAA ATTAAGGAAT TATACTATAC AGTACAATTG
GAGCGGTCTT ATACCAAAGA AGAAATATTG AATATGTATC TGAACCATGT TTATTTTGGA
CAGGGAGCTT ATGGTATTGA GGCTGCGGCC CAGACTTATT TTGACAAACA TGCCCAGGAA
CTAACCTTGG GCGAAAGTGC TTTGCTGGCG GGACTACCCA AGGCACCAAG TTATTACGCG
CCCACAACAA ATTTAGCAGG AGCAAAGCAG AGGCAGCAGG TTGTCTTAAA CAGAATGCTG
GAGTTGGGTA TGATTACACC GGAGAAAAAG AAGCAAGCCC TTGACCAAAC CATAGAACCA
CAGGCCAAAA CAGAGTATTT TCAACAGGCA CCGTACTTTG TTGCAGAGGT GGTTAAGTAT
TTTAAAAATA AATATCCAAA TGGTATGGAG TTACTGTATT CCAGCGGCTT AACCATTCAG
ACTACCCTGG ATATGGATAT GCAGCAAGCT GCTGAACGGG CCATAACCCA GGGATTAGGG
CAGGTTAATA AAGATATGGA AGGGGCCTTG ATAGCCATTG ACCCAAGGAA TGGTTATATA
AAGGCTATGG TTGGAGGACG CAATTGGCAG AAATCTCAAT ACAACCGGGC ATTGGCAAAA
TCACAGCCGG GGTCATCCTT TAAACCATTC CTATACACCG CTGCTATTGA ATCGGGATAT
ACCGCAGCTA CCACTATTTT TTGTAAGCCC ATTACCTACC CTGGGGGATA TAGGCCAAAG
GATTATCATG GCTATCATTA TCGTCCCTTT ACCCTGAAAC AGGCCCTGGC CATTTCAGAT
AACGTGGTAT CTGTTCAATT GGCCGACCGT TTGGGACCAG AAGTACTGGT GCGTTATGCC
AAAGCAATGG GCATTGAAAG TAAACTGGAT CCTTATTTGT CTCTGGCCCT TGGGTCCGCT
GAAGTATCCC CCCTAGAAAT GGCAGTTGCC TTTGGCCCCC TGGCCAATGA AGGAATTCGA
ACAAAACCGC TATCCATCTT AAGGGTAACC GACAGCTCAG GTAGGGTTTT GGAAGAGGCG
CACCCCCAGC GCTACAAGGT CGTTGATGAG AAAGTGGCCT ATATTGTTAC CGATATGTTA
AAGGCTGCGG TGCAACCCGG TGGTACTGCG GCACAAATAT CCCAATTAGT CTCGAGACCA
GTGGCAGGTA AGACAGGAAC CACAGATGAG TCCACCAATG CCTGGTTTGT TGGCTATTCT
CCAGAGCTAG TGGCATCGGT TTATGTTGGG TACGATGATA AAAGTAAAAA GGTTGGTTTA
ACAGGCAGTG ACATTGCTGC ACCTATTTGG GGTAACTTTT TTGAGGAAGC ATTAAAGGGC
ACAGAAAAAA CAGATTTTAA AAAACCCGTG GGGGTTGTTG AGGTTAATAT CTGTGCCTAT
GATGGACTAA AGGCTTCGGT ATTTTCCAGT GACACCTTAA GTGCTTATTT TATTAAGGGG
ACGGAGCCTA AAATACCTTG TTTTGGAGAT TTCTGGTGGA AGGAGCAAGA AGGGCTTAGC
GAGGAGATAC CTGACCAAAG AGGGAAGCAG AAAAAAAGAT TAAATGAGTA TGAGGAGAAT
CAATAA
 
Protein sequence
MQRPKLFLLL VSFIIIFNIT SGCADIGQRE PPDVPTPSRI VDVNNKLITT ISQTNQIPVE 
LDQIAPEMQQ AIVAIEDYRF YEHSGIDIKG LARAALINIR NLRIVEGGST ITQQLAKNLY
LGPERTLGRK IKELYYTVQL ERSYTKEEIL NMYLNHVYFG QGAYGIEAAA QTYFDKHAQE
LTLGESALLA GLPKAPSYYA PTTNLAGAKQ RQQVVLNRML ELGMITPEKK KQALDQTIEP
QAKTEYFQQA PYFVAEVVKY FKNKYPNGME LLYSSGLTIQ TTLDMDMQQA AERAITQGLG
QVNKDMEGAL IAIDPRNGYI KAMVGGRNWQ KSQYNRALAK SQPGSSFKPF LYTAAIESGY
TAATTIFCKP ITYPGGYRPK DYHGYHYRPF TLKQALAISD NVVSVQLADR LGPEVLVRYA
KAMGIESKLD PYLSLALGSA EVSPLEMAVA FGPLANEGIR TKPLSILRVT DSSGRVLEEA
HPQRYKVVDE KVAYIVTDML KAAVQPGGTA AQISQLVSRP VAGKTGTTDE STNAWFVGYS
PELVASVYVG YDDKSKKVGL TGSDIAAPIW GNFFEEALKG TEKTDFKKPV GVVEVNICAY
DGLKASVFSS DTLSAYFIKG TEPKIPCFGD FWWKEQEGLS EEIPDQRGKQ KKRLNEYEEN
Q