| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_2093 |
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| Symbol | |
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| ID | 4955361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | - |
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| Start bp | 2288555 |
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| End bp | 2289685 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640181262 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001113435 |
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| Protein GI | 134299939 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD
[TIGR01508] 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0587907 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCAGG ACAGGCACTA TATGAACATG GCCCTTGAAC TGGCAGCCAA GGCTAGAGGA
CGCACCAGCC CTAATCCTAT GGTGGGAGCT GTTTTGGTTA AGGATGGGGA AGTGGTTGGC
AAAGGTTTTC ATGCCAAAGC AGGCGGTGCC CATGCAGAAG TAGTGGCGTT GGCCGATGCT
GGTGATCGGG CAAAGGGAGC CACAGTGTAT GTAACATTGG AACCTTGTTG TCATCATGGG
AAAACCGGAC CTTGTACAGA GGCATTGAAA AAAGCAGGGG TTAAAAGGGT TGTGGCCGCC
ATGACTGACC CGAACCCTTT GGTTGCAGGT AAGGGCTTAA ATATTTTAAA GGATGCCGGT
ATAGAAGTGG TATCCGGTTT GTTGGAGGAA GAAGCAAAGG AATTAAATGA GGTTTTTATT
AAATATATAA CAACAAAAAT ACCCTTTATT GTCTTAAAGG CTGCCACCAG CTTGGATGGT
AAAATAGCAA CAGCCAGTGG GGAATCTAAG TGGATTACCG GTGATACAGC CAGAAATTAT
GGACACAGAT TAAGGGATGC CTACGATGCC ATATTGGTGG GGGTTAATAC TGTATTAGCT
GATGATCCAT CTTTAACTGC CAGATTGCCC GAAGGCAGGG GCAAAGATCC CCTGCGGATT
ATTGTAGACA GCATGTCCCG TACCCCTACC AGTGCAAAGA TACTAACCCA GGAGTCTGCT
GCCCATACCA TCATTGCAAC GACCCAAGCG GCACCAGTGG AGCGTCGTGC AAGTTTAATG
GCCGCTGGCG CAGAGGTTAT AGTAGTACCG GGCGAAGGTC CAGGGGTTGA CCTGAAAAAA
TTAATGGTTC TGCTGGGGGA AAAGCAAATA TCCAGTGTGC TCATTGAAGG CGGCGGTAAA
ATTAGCGGTT CTGCTTTGAA TGCAGGTATT GTTGATAAAG TTGCTTGGTT TATTGCCCCT
AAAATCATCG GCGGGGACCT CGCTCCGGGA CCTGTTCGGG GTGAAGGAAT TCAATTCTTA
AAAGATGCTA CAAAACTATA TAAGGTAACA GTGCAAAACT TAGGAGCAGA TATTCTCATC
ACTGGTTATA CCTCGAAAGG GGGGGACAAG ATATCTTTAC TGGAATTGTA G
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| Protein sequence | MDQDRHYMNM ALELAAKARG RTSPNPMVGA VLVKDGEVVG KGFHAKAGGA HAEVVALADA
GDRAKGATVY VTLEPCCHHG KTGPCTEALK KAGVKRVVAA MTDPNPLVAG KGLNILKDAG
IEVVSGLLEE EAKELNEVFI KYITTKIPFI VLKAATSLDG KIATASGESK WITGDTARNY
GHRLRDAYDA ILVGVNTVLA DDPSLTARLP EGRGKDPLRI IVDSMSRTPT SAKILTQESA
AHTIIATTQA APVERRASLM AAGAEVIVVP GEGPGVDLKK LMVLLGEKQI SSVLIEGGGK
ISGSALNAGI VDKVAWFIAP KIIGGDLAPG PVRGEGIQFL KDATKLYKVT VQNLGADILI
TGYTSKGGDK ISLLEL
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