Gene Dred_2002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_2002 
Symbol 
ID4956844 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp2200669 
End bp2201619 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content40% 
IMG OID640181169 
ProductATP dependent DNA ligase 
Protein accessionYP_001113345 
Protein GI134299849 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase 
TIGRFAM ID[TIGR02779] DNA polymerase LigD, ligase domain 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAACA GTAAGTTACC AAAGGTAAAA CCTATGTTAG CTGTACCAGC AGACCCCTTT 
GATAGCAATG ATTACTTATA TGAAATAAAA TGGGATGGTT ACCGTGGGTT AGTCTATCTA
AGTGAGCAAA CAACCATTCT CTCAAGAAAT TTAATAAATC TCACGGAAAG GTTTCCCGAA
TTGCAAAATT TACATAAAAA AGTTATACAG AAACCAGCCA TATTGGATGG AGAAATTGTA
GTGCTGGAGG AAGGTAAACC ATCCTTTAGC AAACTTCAAT CTAGGGGAAA GATAACGGAT
GCTTTAAAAG TGAATCAGCT ATCCAGACGT TTTCCTGTAA GCTTTATTGC CTTTGATGTT
TTATACAAAG ACGGCGAGAG TATTATGAAT TTACCACTGG AGAGCAGAAA AAAAGTCCTT
GAGGATATTA TAGAGCCGGG AACCCATTTG ATTGTATCTC AATATGTACA TGGTTCGGGT
ATTAAATTTT ATGAAGCAGT TCAGAAAGTT GGGCTTGAGG GAATGATGGC GAAACGGTTA
GATAGTTTAT ACATGCCTGG GAAAAGGTCA CCAGTCTGGA AAAAAGTACG CAATACTCAT
TCGGCAGAAT GGGTTATTGC CGGTTGGGAA AAGGGAGAAG GTCACCGGCA TCTAGGTTCC
CTGATACTAG TTGGTTTTAA TCAAGGTAAA TGGATATACA TGGGGAAGGT AGGGACCGGC
TTTGGCAAAG ATGACGAGAA CAAATTATTG AGACTAATGG AACCATTAGA GATTGATGAA
TCGGTTTTTA CTCCCCCTAG GGGAGAGTTT CGATCTCCTG TTTGGGTTAA ACCGACATTA
ATTTGCGAAG TGACATTTAC CGAAATCAGT CCAGAGGGTA GATTGAGGCA CCCCAGTTAT
AAAGGACTAC GGTATGATAA GAACCCGCAG GAATGCACAA TAGATCAATA G
 
Protein sequence
MNNSKLPKVK PMLAVPADPF DSNDYLYEIK WDGYRGLVYL SEQTTILSRN LINLTERFPE 
LQNLHKKVIQ KPAILDGEIV VLEEGKPSFS KLQSRGKITD ALKVNQLSRR FPVSFIAFDV
LYKDGESIMN LPLESRKKVL EDIIEPGTHL IVSQYVHGSG IKFYEAVQKV GLEGMMAKRL
DSLYMPGKRS PVWKKVRNTH SAEWVIAGWE KGEGHRHLGS LILVGFNQGK WIYMGKVGTG
FGKDDENKLL RLMEPLEIDE SVFTPPRGEF RSPVWVKPTL ICEVTFTEIS PEGRLRHPSY
KGLRYDKNPQ ECTIDQ