| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1970 |
|---|
| Symbol | |
|---|
| ID | 4957343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 2165598 |
|---|
| End bp | 2166761 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640181137 |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_001113313 |
|---|
| Protein GI | 134299817 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAC AGATATCTAT TTTAGGAAGT ACCGGCTCGA TTGGCAGGCA GACCCTGGAA
GTTGTAAATA GTTTCCCGGA AGAACTTAAT GTGGTAGCCT TAGCTGCAGG CAGAAACCGT
GAGTTGTTTT TGGAACAATG TAAAGCCTAT AAACCCCTTT TAGTTTCCCT TCAGTTAGAA
GAAGATGCTC TTTGGCTTAA AGAGCATCTG ATAAAGGAGA AGTTAAGGCC TGAAATTCGT
TATGGTTTAG ATGGTCTGGT GGCGGTGGCC ACTTGTCATG AAGCAGTTGT AGTTGTAACC
GCGCTAAGTG GGGCCATTGG TTTAGTTCCC ACCTGTGCTG CCATCAAAGC AAGTAAGAAA
ATTGCACTGG CAAACAAAGA AACTCTGGTG GCAGCGGGAC AATATGTTAC TAAACTGGCA
GAAGAATATA AGGTTGAAAT TTTACCTGTG GATAGTGAAC ATTCCGCTAT TTGGCAGTGC
TTACATGGGG AAAATAGATC AGCGATAAGA AAAATCCAAC TGACAGCCTC TGGTGGTCCT
TTTCGCCAAT TAAACAGACA AGAACTTGAA AATGTCACGC CAGAGATGGC CCTGAAACAT
CCCAATTGGT CCATGGGACA AAAAATCACC ATCGACTCCG CTACTTTAAT GAACAAAGGA
TTAGAAGTTA TAGAAGCCAA ATGGCTTTTT GGTGTTGACT ACGACGATAT TAATGTAGTG
GTTCATCCCC AGAGTGTTAT TCATTCCATG GTTGAATATG GCGATGGTTC ATTGCTTGCT
CACCTTGGCA TGCCAGATAT GAGAATACCC ATTCAATATG CCCTTAGTTA CCCAGAACGT
TGGTTTAACC ATTTACCTAA GTTAAATCTA ACAGAACTTA AGGGGCTAAC CTTCGAAGAA
CCAGATACAA ATAGGTTTCC TTCCCTGTCA TTGGCTTATC AGGCTGGGAA AATAGGAGGT
ACAGCACCGG CAGTTTTAAA CGCTGCCAAC GAAGTAGCTG TTCATGCATT TCTGGCGGGA
CAAATAAAAT TTATGCAAAT TCCCTCCATT GTTAAACGAA CTTTAAACGA ACATCAATTT
CAGGGGTCTC CTGTCCTAGA GGAGATTCTT GAAATTGATG GTTGGGCAAG GGAAGAGGCA
AACAAAATCA TTAGAAATTG TTAG
|
|---|
| Protein sequence | MMKQISILGS TGSIGRQTLE VVNSFPEELN VVALAAGRNR ELFLEQCKAY KPLLVSLQLE
EDALWLKEHL IKEKLRPEIR YGLDGLVAVA TCHEAVVVVT ALSGAIGLVP TCAAIKASKK
IALANKETLV AAGQYVTKLA EEYKVEILPV DSEHSAIWQC LHGENRSAIR KIQLTASGGP
FRQLNRQELE NVTPEMALKH PNWSMGQKIT IDSATLMNKG LEVIEAKWLF GVDYDDINVV
VHPQSVIHSM VEYGDGSLLA HLGMPDMRIP IQYALSYPER WFNHLPKLNL TELKGLTFEE
PDTNRFPSLS LAYQAGKIGG TAPAVLNAAN EVAVHAFLAG QIKFMQIPSI VKRTLNEHQF
QGSPVLEEIL EIDGWAREEA NKIIRNC
|
|---|
| |