Gene Dred_1869 details

Gene Information

• Locus tag: Dred_1869
• Symbol: sdhA
• ID: 4957968
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfotomaculum reducens MI-1
• Kingdom: Bacteria
• Replicon accession: NC_009253
• Strand: -
• Start bp: 2054648
• End bp: 2056405
• Gene Length: 1758 bp
• Protein Length: 585 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640181042
• Product: succinate dehydrogenase flavoprotein subunit
• Protein accession: YP_001113218
• Protein GI: 134299722
• COG category: [C] Energy production and conversion
• COG ID: [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
• TIGRFAM ID: [TIGR01811] succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000746215
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAAATA AAATCATTGT GGTTGGCGGT GGTCTGGCTG GTTTAATGGC AACCATAAAA 
GCTGCGGAGA TGGGTGTGAA GGTTCGGCTG TTTTCTTTGG TTCCGGTTAA AAGATCCCAC 
TCGGTGTGTG CCCAGGGTGG AATCAACGGA GCTGTAAACA CCAAAGGCGA AGGCGATTCT 
CCCTGGATAC ATTTTGATGA CACAATTTAC GGCGGGGACT TTCTGGCCAA CCAACTCCAA 
GTAAAAAATA TGTGTGAGGC AGCCCCGGCA ATTATTAATT TAATGGATCG GATGGGTGTT 
ATGTTTAATC GAACTCCCGA AGGTTTATTA GATTTTAGAA GGTTTGGTGG CAGTAAACAT 
CACAGGACAG CCTTTGCTGG GGCTACTACT GGACAACAAT TATTATATGC CCTTGATGAA 
CAGGTTCGAC ATTGGGAAGT GGCTGGCTTT GTAGAAAAAT ATGAAGGCTG GGATCTTTTA 
TCCATCGTTA TGGATAGTGA AAACATTTGC CGAGGCATAG TAGCCCAAGA TCTAAAAAGC 
ATGAAAGTCC AGTCTTTTTC AGGTGATGCT GTGATTCTGG CCACTGGTGG TTGTGGCATT 
GTGTATGGTA AGAGTACCAA TTCCACCATT AATACAGGGG CTGCTGCCAG TGCAGTTTAT 
CAGCAGGGGG TCTACTATGC CAATGGCGAA ATGATCCAAA TTCACCCCAC CGCTATCCCT 
GGGGATGACA AACTGAGATT AATGAGTGAA TCGGCCCGGG GCGAAGGGGG GCGTCTGTGG 
ACCATTAAGG ATGGCAAGCC GTGGTACTTC CTGGAGGAAT GGTACCCTGC CTATGGCAAC 
TTGGTTCCGC GGGATATTGC AACCCGGGCA ATTTATAGGG TATGCTATGA GTTGAAACTT 
GGTATTGAAG GAAAAAACAT GGTTTATCTG GATGTTTCAC ACGTTGAGCG AGAAATATTG 
GATAAAAAAC TAGCAGGTAT TCTGGAGATT TATGAACGTT TTGTGGGGGA TGACCCACGA 
AAAGTTCCTA TGAGAATCTT TCCAGCGGTT CATTACTCCA TGGGCGGTCT TTGGGTGGAC 
TATGATCAAA TGACAAATAT TACCGGTTTG TTTGCCTGTG GTGAGTGTGA ATATCAGTAC 
CATGGTGCAA ACCGCCTTGG CGCTAATTCA TTATTATCAG CAATTTATGG CGGAATGGTT 
GCCGGACCCA ATGCAGTAAA GTACCTTCAT TCTCTGAAAA GGACAGCACA GGATGTTAGC 
CAAAGTATAT TTACACAAGA AGAAAAGCGT CAACAAGCTT GGGTAGAGAA AACTTATAAA 
ATGGATGGTA CAGAGAATGT TTATAAACTG CATGAAGAGT TAGGGGAATG GATGACAGAA 
AACGTTACAG TGGTACGATA CAATAAAAAG CTTCAAGAAA CAGATCAAAA AATACAGGAA 
CTCATTGCAA GATGGCATCG AATAAAATTA ACGGATAAGA GCATCTGGGC GAATCAAGAA 
GTGACTTTTG TTCGGCATTT GTGGCATATG CTGCAGTTGT CCAGGGTTAT TACGCTGGGG 
GCGCTGGCTC GCAATGAAAG CAGGGGAGCC CATTATAAAC CGGAATTTCC AGATCGTGAT 
GACCAAAACT GGTTAAAAAC AACCAAGGCA AAATATACTT TCAATGGTCC AGAATTAACC 
TATGAAGATA TAGATACTTC GCTTATTAAG CCAAGGCCGC GGAGATATGA TGTTGATAAA 
GGGGCGTTGA ATAAATGA 

 

Protein sequence

MQNKIIVVGG GLAGLMATIK AAEMGVKVRL FSLVPVKRSH SVCAQGGING AVNTKGEGDS 
PWIHFDDTIY GGDFLANQLQ VKNMCEAAPA IINLMDRMGV MFNRTPEGLL DFRRFGGSKH 
HRTAFAGATT GQQLLYALDE QVRHWEVAGF VEKYEGWDLL SIVMDSENIC RGIVAQDLKS 
MKVQSFSGDA VILATGGCGI VYGKSTNSTI NTGAAASAVY QQGVYYANGE MIQIHPTAIP 
GDDKLRLMSE SARGEGGRLW TIKDGKPWYF LEEWYPAYGN LVPRDIATRA IYRVCYELKL 
GIEGKNMVYL DVSHVEREIL DKKLAGILEI YERFVGDDPR KVPMRIFPAV HYSMGGLWVD 
YDQMTNITGL FACGECEYQY HGANRLGANS LLSAIYGGMV AGPNAVKYLH SLKRTAQDVS 
QSIFTQEEKR QQAWVEKTYK MDGTENVYKL HEELGEWMTE NVTVVRYNKK LQETDQKIQE 
LIARWHRIKL TDKSIWANQE VTFVRHLWHM LQLSRVITLG ALARNESRGA HYKPEFPDRD 
DQNWLKTTKA KYTFNGPELT YEDIDTSLIK PRPRRYDVDK GALNK