| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1828 |
|---|
| Symbol | |
|---|
| ID | 4957718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 2007913 |
|---|
| End bp | 2008449 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 640181002 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001113178 |
|---|
| Protein GI | 134299682 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.467119 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAATAAGG AATTTAGTAA ATTAATTTTT GAATTGTATT ATGAGCCTGC CTTCCAAGCC
GCTTATTTTT ATTGTGGTGA TGCCGCAATT TCTGAGGAGG CGGCACAAGA AGCAATCTAT
AAGGCAATTC AAAACATAGA CCAACTAAGA GATCCAGAAA AAATTGAGGC GTGGATAAAG
AAAATCACAA TAAATAATGT AAATAGTATA TTAAATAAAT ATAAAAAAGT GGTTAGTATA
GAGCTAATTG GCCCAATTGT TGACTCTATA GAAAAGTCTC CGGAATATGT GGTAAGTTCG
AAGGATACTA TTTCTGCGGT AAATAAAGCA ATAGATACTC TAGACCCCGT TATGAAACAG
ATAATTCATC TTTATTACTA TCAGGAAATG AAGGTAAAGG ATATCTCTAT TTTGATTCAA
AAACCAGAGG GAACGGTTAA AACACTATTA TATAGAGCTA GGATTCTTAT CAAAAACCAT
TTAGTTAAAG AAGGGTACGT AATAGGTACC TCGGAAGGTG GGTTGAAGGT TGAGTGA
|
|---|
| Protein sequence | MNKEFSKLIF ELYYEPAFQA AYFYCGDAAI SEEAAQEAIY KAIQNIDQLR DPEKIEAWIK
KITINNVNSI LNKYKKVVSI ELIGPIVDSI EKSPEYVVSS KDTISAVNKA IDTLDPVMKQ
IIHLYYYQEM KVKDISILIQ KPEGTVKTLL YRARILIKNH LVKEGYVIGT SEGGLKVE
|
|---|
| |