Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dred_1776 |
Symbol | |
ID | 4955647 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfotomaculum reducens MI-1 |
Kingdom | Bacteria |
Replicon accession | NC_009253 |
Strand | + |
Start bp | 1943148 |
End bp | 1945244 |
Gene Length | 2097 bp |
Protein Length | 698 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 640180949 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001113126 |
Protein GI | 134299630 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2524] Predicted transcriptional regulator, contains C-terminal CBS domains [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGGTGGAAG TGAAGCTACG AGATATTATG ACCCGCAAGC CCATTGTTCT GACACCGGAG CAAACTGTCC AAGAGGTGGC GGAAATCTTC CTGAACCACC AGGTAGATGG TGCACCGGTA ATTGATAGCA ATGGAAATAT TATTGGACTT TTTACGAAGA GTCAAATCTT CAAACTGGTT AGTCAGGGAC TGAGTGTACA GACGACAATT GCTACATTAA TTAGAAGAGA CGTTAATAAT AACTCAAATG ATGATGTGGA AGAAATTTTA ATGCAGGAAT CGGGGCGGTT CCCCCTTACT GAAGGGCAAG CTTTTGCAGA CATGAAAACA CGGACGAATC TTTTAAGTGC GTTCAATAAT TTTTATCAAG ATGTTTCTTG TGAGTTTGCC ACAATCATTA ACTCCATTCA TGATCTGATT GTTTCTGTGG ATGAAGAAGG AAGAATTAAG GTGTTTAACA GATCAGCAGA GAAATTCTTC GGAAAAACAT TACAAGAGGT AAAGGGAAAA AAGATTAATG AACTATTTCC CAACATTGGA CTGATGGATG TTATTCAATC AGGCAAAGTT GAAAAGATAC ATAAAGTTTT GCTAAATAAT CAATATTTTA TCATTAATAA ATTCCCCGTC AAGATGAATG ACAAAATCAC CGGAGCCGTA GCTGTCTTTC AACAATTTTC CGAGTTGGAA AGTATATCTG GGGAGTTAAA ATCTGTTAAA GAATTAAATC AAGAATTTGA TGCCATTATA CAATCTTCCT TTGACGGACT TTTCATTACC GATGGAAACG GGATAACCCT TCGAACGAAC AAAGCCTTTG AACGTATAAC CGGTGCAGAT GCTTCAACAC TTTTAGGGCG TCACATTGAG GATCTAATAG ATGAGGGAAT TGTTTCGGAA TCAGTGACAT CCCTTGTCCT AAAGCAGCGA GAAACCGTTA CCATTATGCA AAAAACACAG ATTGGCAAGA TAACCTTGGC TACAGGTAAT CCAGTCTTTG ACGAAAATGG TAATGTCTTT CGAGTGGTTT GTAACATCCG TGATATCACT GAACTGAACT TGCTAAAACA GGAATTGGAA CAGGCCCGGG GATTGAGGCT TCATTACGAG AGACAATTGC GCTCGTTAGG CATTCATTAT CCCGGCTCCG ACAAGATGGT GGTTAATTCA GCAAAAATGA AGGACCTCAT GGGGCTCATC ATGCGGTTAG CCGAGGTTAA TTCAACTATT TTAATCACCG GGGAATCAGG AACAGGGAAA GAATTAATTG CAGAAACACT ACACAAGAAC AGTCCCCGCC AAGATGGACC TTTCATTAAA GTTAATTGTG GAGCAATTCC AGAAAACTTA TTGGAATCAG AATTATTTGG TTATGAATAT GGTGCCTTTA CAGGTGCTAA AAAACAAGGT AAAGCTGGCT ATTTCGAGTT GGCAATGGGG GGGACTCTTT TTCTTGATGA GATTGGGGAC TTGCCTCTGA ACCTGCAGGT TAAACTATTA CGAGTTCTAC AGAGTAGAGA AATTGTCCGG GTTGGGGGAG AAAAACCCCT TAAGATTGAT GCTCGCATTT TAGCAGGCAC CAACCGAAAT TTAATTGAAA TGGTTCGACA TAAAGAGTTT CGGGAGGATC TCTATTATCG ATTAAATGTA GTTCCCGTAA ATGTACCTCC CCTAAGGGAG AGAAAAGAGG ATATACCAGC ACTGGTTACT CACTTTGTTT TGATGTTTAA TCTTAAATAT AAACTTAACA AAAGAATTTC CCGTGAGGTG ATAGACATCT TCCTTCGGTA CAATTGGCCA GGCAATGTTC GGGAACTGGA AAATCTTATT GAAAGATTAG TGGTTGTAAC CCCTAGGGAC TTATTAACCA GGGAGGATCT CCCTCCTAAT CTGGGAGGAA GTACCCCAGA GAGTTTGCCT GTTCAGGTAT CTGGCCTTAT GCCCTTGAAA GATGCAGTGG AATATGTAGA AAAACAAGTA TTAGAAAGGG CCTATGCAGA ATGCAGAACA ACTCGACAAA TGGCCAAAGC ATTAAAAGTC GATGCTTCTA CTATTGTCCG TAAAGCTGCT AAGTATGGAA TTTCAAAAGC ACAATAG
|
Protein sequence | MVEVKLRDIM TRKPIVLTPE QTVQEVAEIF LNHQVDGAPV IDSNGNIIGL FTKSQIFKLV SQGLSVQTTI ATLIRRDVNN NSNDDVEEIL MQESGRFPLT EGQAFADMKT RTNLLSAFNN FYQDVSCEFA TIINSIHDLI VSVDEEGRIK VFNRSAEKFF GKTLQEVKGK KINELFPNIG LMDVIQSGKV EKIHKVLLNN QYFIINKFPV KMNDKITGAV AVFQQFSELE SISGELKSVK ELNQEFDAII QSSFDGLFIT DGNGITLRTN KAFERITGAD ASTLLGRHIE DLIDEGIVSE SVTSLVLKQR ETVTIMQKTQ IGKITLATGN PVFDENGNVF RVVCNIRDIT ELNLLKQELE QARGLRLHYE RQLRSLGIHY PGSDKMVVNS AKMKDLMGLI MRLAEVNSTI LITGESGTGK ELIAETLHKN SPRQDGPFIK VNCGAIPENL LESELFGYEY GAFTGAKKQG KAGYFELAMG GTLFLDEIGD LPLNLQVKLL RVLQSREIVR VGGEKPLKID ARILAGTNRN LIEMVRHKEF REDLYYRLNV VPVNVPPLRE RKEDIPALVT HFVLMFNLKY KLNKRISREV IDIFLRYNWP GNVRELENLI ERLVVVTPRD LLTREDLPPN LGGSTPESLP VQVSGLMPLK DAVEYVEKQV LERAYAECRT TRQMAKALKV DASTIVRKAA KYGISKAQ
|
| |