| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1776 |
|---|
| Symbol | |
|---|
| ID | 4955647 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 1943148 |
|---|
| End bp | 1945244 |
|---|
| Gene Length | 2097 bp |
|---|
| Protein Length | 698 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640180949 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_001113126 |
|---|
| Protein GI | 134299630 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2524] Predicted transcriptional regulator, contains C-terminal CBS domains
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTGGAAG TGAAGCTACG AGATATTATG ACCCGCAAGC CCATTGTTCT GACACCGGAG
CAAACTGTCC AAGAGGTGGC GGAAATCTTC CTGAACCACC AGGTAGATGG TGCACCGGTA
ATTGATAGCA ATGGAAATAT TATTGGACTT TTTACGAAGA GTCAAATCTT CAAACTGGTT
AGTCAGGGAC TGAGTGTACA GACGACAATT GCTACATTAA TTAGAAGAGA CGTTAATAAT
AACTCAAATG ATGATGTGGA AGAAATTTTA ATGCAGGAAT CGGGGCGGTT CCCCCTTACT
GAAGGGCAAG CTTTTGCAGA CATGAAAACA CGGACGAATC TTTTAAGTGC GTTCAATAAT
TTTTATCAAG ATGTTTCTTG TGAGTTTGCC ACAATCATTA ACTCCATTCA TGATCTGATT
GTTTCTGTGG ATGAAGAAGG AAGAATTAAG GTGTTTAACA GATCAGCAGA GAAATTCTTC
GGAAAAACAT TACAAGAGGT AAAGGGAAAA AAGATTAATG AACTATTTCC CAACATTGGA
CTGATGGATG TTATTCAATC AGGCAAAGTT GAAAAGATAC ATAAAGTTTT GCTAAATAAT
CAATATTTTA TCATTAATAA ATTCCCCGTC AAGATGAATG ACAAAATCAC CGGAGCCGTA
GCTGTCTTTC AACAATTTTC CGAGTTGGAA AGTATATCTG GGGAGTTAAA ATCTGTTAAA
GAATTAAATC AAGAATTTGA TGCCATTATA CAATCTTCCT TTGACGGACT TTTCATTACC
GATGGAAACG GGATAACCCT TCGAACGAAC AAAGCCTTTG AACGTATAAC CGGTGCAGAT
GCTTCAACAC TTTTAGGGCG TCACATTGAG GATCTAATAG ATGAGGGAAT TGTTTCGGAA
TCAGTGACAT CCCTTGTCCT AAAGCAGCGA GAAACCGTTA CCATTATGCA AAAAACACAG
ATTGGCAAGA TAACCTTGGC TACAGGTAAT CCAGTCTTTG ACGAAAATGG TAATGTCTTT
CGAGTGGTTT GTAACATCCG TGATATCACT GAACTGAACT TGCTAAAACA GGAATTGGAA
CAGGCCCGGG GATTGAGGCT TCATTACGAG AGACAATTGC GCTCGTTAGG CATTCATTAT
CCCGGCTCCG ACAAGATGGT GGTTAATTCA GCAAAAATGA AGGACCTCAT GGGGCTCATC
ATGCGGTTAG CCGAGGTTAA TTCAACTATT TTAATCACCG GGGAATCAGG AACAGGGAAA
GAATTAATTG CAGAAACACT ACACAAGAAC AGTCCCCGCC AAGATGGACC TTTCATTAAA
GTTAATTGTG GAGCAATTCC AGAAAACTTA TTGGAATCAG AATTATTTGG TTATGAATAT
GGTGCCTTTA CAGGTGCTAA AAAACAAGGT AAAGCTGGCT ATTTCGAGTT GGCAATGGGG
GGGACTCTTT TTCTTGATGA GATTGGGGAC TTGCCTCTGA ACCTGCAGGT TAAACTATTA
CGAGTTCTAC AGAGTAGAGA AATTGTCCGG GTTGGGGGAG AAAAACCCCT TAAGATTGAT
GCTCGCATTT TAGCAGGCAC CAACCGAAAT TTAATTGAAA TGGTTCGACA TAAAGAGTTT
CGGGAGGATC TCTATTATCG ATTAAATGTA GTTCCCGTAA ATGTACCTCC CCTAAGGGAG
AGAAAAGAGG ATATACCAGC ACTGGTTACT CACTTTGTTT TGATGTTTAA TCTTAAATAT
AAACTTAACA AAAGAATTTC CCGTGAGGTG ATAGACATCT TCCTTCGGTA CAATTGGCCA
GGCAATGTTC GGGAACTGGA AAATCTTATT GAAAGATTAG TGGTTGTAAC CCCTAGGGAC
TTATTAACCA GGGAGGATCT CCCTCCTAAT CTGGGAGGAA GTACCCCAGA GAGTTTGCCT
GTTCAGGTAT CTGGCCTTAT GCCCTTGAAA GATGCAGTGG AATATGTAGA AAAACAAGTA
TTAGAAAGGG CCTATGCAGA ATGCAGAACA ACTCGACAAA TGGCCAAAGC ATTAAAAGTC
GATGCTTCTA CTATTGTCCG TAAAGCTGCT AAGTATGGAA TTTCAAAAGC ACAATAG
|
|---|
| Protein sequence | MVEVKLRDIM TRKPIVLTPE QTVQEVAEIF LNHQVDGAPV IDSNGNIIGL FTKSQIFKLV
SQGLSVQTTI ATLIRRDVNN NSNDDVEEIL MQESGRFPLT EGQAFADMKT RTNLLSAFNN
FYQDVSCEFA TIINSIHDLI VSVDEEGRIK VFNRSAEKFF GKTLQEVKGK KINELFPNIG
LMDVIQSGKV EKIHKVLLNN QYFIINKFPV KMNDKITGAV AVFQQFSELE SISGELKSVK
ELNQEFDAII QSSFDGLFIT DGNGITLRTN KAFERITGAD ASTLLGRHIE DLIDEGIVSE
SVTSLVLKQR ETVTIMQKTQ IGKITLATGN PVFDENGNVF RVVCNIRDIT ELNLLKQELE
QARGLRLHYE RQLRSLGIHY PGSDKMVVNS AKMKDLMGLI MRLAEVNSTI LITGESGTGK
ELIAETLHKN SPRQDGPFIK VNCGAIPENL LESELFGYEY GAFTGAKKQG KAGYFELAMG
GTLFLDEIGD LPLNLQVKLL RVLQSREIVR VGGEKPLKID ARILAGTNRN LIEMVRHKEF
REDLYYRLNV VPVNVPPLRE RKEDIPALVT HFVLMFNLKY KLNKRISREV IDIFLRYNWP
GNVRELENLI ERLVVVTPRD LLTREDLPPN LGGSTPESLP VQVSGLMPLK DAVEYVEKQV
LERAYAECRT TRQMAKALKV DASTIVRKAA KYGISKAQ
|
|---|
| |