| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1725 |
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| Symbol | |
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| ID | 4956768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | + |
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| Start bp | 1884229 |
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| End bp | 1885956 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640180900 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001113077 |
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| Protein GI | 134299581 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATAAAG GTTTTTTAAC TGTAAAAGAG ATGTTGTATA AGGATCTTCT ATCGGTTACT
CCAGAAGAAA CCATAGGTAA AGTTAGGGAA AAGGGTGTTC CGAACCGTCC TGTTGTGCTG
GCAATGGATG GTGATCGTTT AGTGGGAGTA ATGCTTTGGA AGGATGTTAT TAATCGTAAG
CTCGAATCAG ATGTGCTAGT GAACCAAGTG ATGAGAAGGG ATTTTTCTTC TCTGGATGAA
GAAGACCTTG AGAGGGAAAT CTTGGCCTTT TTACCGGAAC TTCGCTACCA TGCCCTTGTT
TGCCGAAATA ATCAGGGAGA TATATTAGGG GTTCTATCCT ATGATCAGGT ATTTCATGAT
CTTGCTTTAC GAGTTTGTGA AACCGAAGCA AGGATTAATG CGGTTGTGGA AACTGTAGAC
GAAGCTGTAT GTATTGTTGA TAATAATGAT ATGGTTACCA GCTGGAACAG CCGTGCTGAA
GAACTATATG GAATAAAAGC ACAGGATATC ATTGGCAAAC CGATTTGTAG CTTTTTTACC
AACCTGGTGG TAACCAGAGT GAATAAAGAG TGGCAGGAAA TACGATCTCT ACACCATCAA
CCTGTACCGG GTACCCACGT TTTAATAAAT GCTACTCCTG TACGATTAGG ACCTAAAGTG
ATAGGTGGTG TAACCGCTGA AAGGGATGTT ACTGAGATAG TACAACTGAA TCAAAAATTA
AACCAGGCCA GTTCTCAAGT GCAGCGTCTG GAAAAGGAAA TTGATAAATT TTCTACCGAC
CGAAATCCCT TTGCTGCTGT CAAGGGTCAC CATAAAAGAT TGACAGAATT AATCAATGTT
GCCAGAAAGG CAGCCTTAAC CAGTGCTGTT GTGCTATTAC GTGGGGAAAG CGGTACAGGC
AAGGAATTGT TTGCTAAGGC AATTCATGAA GCAAGTCCCC GTATAGACAA AAAGTTTTGT
GTTATCAATT GCGCCGCAAT TCCCCCCAGT CTTTTTGAAA GTGAAATGTT CGGTTATGAG
AGTGGTGCCT TCACAGGTGC CGATAAAAAA GGGAAAATAG GTGTGTTTGA AATGGCAGAT
GGCGGCACTT TGTTTCTAGA TGAAATAAGT GAATTGCCGC TGGATATGCA AGTTAAGTTG
CTCAGAGTTC TGCAAGATGG TGTATTCTTT AGAATTGGCG GTTCAACTCC CATAAAAGTA
GATGTAAGAA TTATAGCTGC CACCAACCGT TCCTTGGAGG ATATGATGGC CCATGGAACC
TTCCGGGAAG ACCTTTATTA CCGTTTGAAT GTCGTATCCT TGGAAATCCC ACCCTTGCGC
GAGAGAAGAG AAGACATTCC GGAACTGGTA TACTTATTCT TACAAGAATT CAGTCAACTT
TATAATAAGC AGATTTCCAA ATTGGAGCCA GGTGTCATGG CTACCTTCTT GGCTTACTCA
TGGCCCGGAA ATATTAGGCA GCTAAAGAAT ATCATCGAAC GAATGGTTAT CCTAACAGAG
GGTGACACAG TTCTTGAAAG TGCCATTCCT GAATCATTAA AGCTGAGTTC CAGACAGGAC
CAAGCCACTG CTACCATAGG GTTGGCCTCA GTCACTGAAC AAACAGAACG GGAACTTATC
ATACGAACCC TAAAGCAGGT CAATGGCAAT CGATCAGAAG CTGCCCGTAT GCTGGGTATT
CCTAGAAGTA CACTATATTA TAAAATGCAT CAACTGGGAA TTATGTAA
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| Protein sequence | MHKGFLTVKE MLYKDLLSVT PEETIGKVRE KGVPNRPVVL AMDGDRLVGV MLWKDVINRK
LESDVLVNQV MRRDFSSLDE EDLEREILAF LPELRYHALV CRNNQGDILG VLSYDQVFHD
LALRVCETEA RINAVVETVD EAVCIVDNND MVTSWNSRAE ELYGIKAQDI IGKPICSFFT
NLVVTRVNKE WQEIRSLHHQ PVPGTHVLIN ATPVRLGPKV IGGVTAERDV TEIVQLNQKL
NQASSQVQRL EKEIDKFSTD RNPFAAVKGH HKRLTELINV ARKAALTSAV VLLRGESGTG
KELFAKAIHE ASPRIDKKFC VINCAAIPPS LFESEMFGYE SGAFTGADKK GKIGVFEMAD
GGTLFLDEIS ELPLDMQVKL LRVLQDGVFF RIGGSTPIKV DVRIIAATNR SLEDMMAHGT
FREDLYYRLN VVSLEIPPLR ERREDIPELV YLFLQEFSQL YNKQISKLEP GVMATFLAYS
WPGNIRQLKN IIERMVILTE GDTVLESAIP ESLKLSSRQD QATATIGLAS VTEQTERELI
IRTLKQVNGN RSEAARMLGI PRSTLYYKMH QLGIM
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