Gene Dred_1716 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_1716 
Symbol 
ID4956257 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand+ 
Start bp1875613 
End bp1876269 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content43% 
IMG OID640180891 
Productribulose-phosphate 3-epimerase 
Protein accessionYP_001113068 
Protein GI134299572 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTAAGA TTGCACCCTC CATTTTGTCA GCGGATTTCG CTAACCTTGC TCAATCAGTT 
CAGGTAGTGG AACAAGCAGG AGCTGAATAC TTACATATTG ATGTGATGGA TGGTCATTTT 
GTACCCAATA TAACCATTGG TCCCTTGATT GTTAAAGCCT TAAGACCCAA TAGCAATATG 
GTATTTGATG TACACTTAAT GATTAATAAT CCCGATGCAT ATGTTCCTGA ATTTATAAAA 
GCAGGAGCAG ACTTAGTTTG TGTCCACGCC GAAGCTTGCC CACATCTTCA TCGGTCCCTT 
AGCCAAATAA AGGAGCTAGG CGCCAAGGTT GGTGTGGCCC TAAATCCGCA TACACCGCTT 
AATGTGATTG AGTATGTACT ACCTATGTTG GATTTGGTAT TACTAATGAC CGTAAACCCT 
GGTTTTGGTG GACAAAAATT TATTCCAGAA GTATTACCTA AAATCAAGAT GTTGTCCAAT 
ATGATCCAGG AACGTGGTTT AGCCACGGAA ATTGAAATTG ATGGGGGAAT CAATACAGAG 
ACTGCTCCAT TGGTTGCCCA GGCCGGAGCC AATGTTCTGG TAGCAGGTTC CGCCATTTTT 
GGTGCAACTA ATCCTGCTCA GGCAGTTGCT GATATCCGAA AATCTGCAGG GGCTTAA
 
Protein sequence
MIKIAPSILS ADFANLAQSV QVVEQAGAEY LHIDVMDGHF VPNITIGPLI VKALRPNSNM 
VFDVHLMINN PDAYVPEFIK AGADLVCVHA EACPHLHRSL SQIKELGAKV GVALNPHTPL 
NVIEYVLPML DLVLLMTVNP GFGGQKFIPE VLPKIKMLSN MIQERGLATE IEIDGGINTE 
TAPLVAQAGA NVLVAGSAIF GATNPAQAVA DIRKSAGA