Gene Dred_1654 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_1654 
Symbol 
ID4957024 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp1810542 
End bp1812521 
Gene Length1980 bp 
Protein Length659 aa 
Translation table11 
GC content43% 
IMG OID640180830 
Producthydrogenases, Fe-only 
Protein accessionYP_001113007 
Protein GI134299511 
COG category[C] Energy production and conversion
[R] General function prediction only 
COG ID[COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit
[COG4624] Iron only hydrogenase large subunit, C-terminal domain 
TIGRFAM ID[TIGR02512] hydrogenases, Fe-only 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.357121 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGGAA AAATTACCAT TAATGGTCAA ATTATAGATT TTACCGATGA AAAGAATATT 
CTGGCTGTTG CACGAAAAGT AGGTATTGAT ATCCCTACCC TCTGCTATCA TCCTGAACTA
ACCATTGCGG GTGCTTGTCG TTTGTGTGTG GTAGAAATTG AGAGAATGGG CGTTCAGGCT
TCCTGTTCTA CCGCTCCCAC AGATGGTATG GTGGTTTATA CCAATTCAGA AAAAGTTAAC
AGAGTACGCA AAATGGTACT GGAACTCCTT TTGGCAAATC ACGACCGTGA GTGTACAACC
TGTGACTCCA GCGGGGCTTG CAAACTTCAA AAGTATGCCA ATGACTATGG TATTAAACGT
TTGCGCTATC CAAATCGTAC AACAATGGCT CCATTGGATA CTTCAAGCCT GTCTATTGTT
CGGGATCCCA ACAAGTGTAT CCTATGCGGT TTATGTGTAC GGGTATGTAA AGAAAAACAA
GGCATTGGTG TATGGGATTT CAAAAACCGT GGTTCTCGTA CTGATATTGT TGCCGCTATG
GATCAGCCTT TGTCTGAATC TGCTTGTATT AACTGCGGTC AGTGCATCGC GGTTTGTCCT
ACAGGAGCCC TTACATCCAA CTCCTCTTCT ATACAAGAAA TTTGGGCGGC CATTCGTGAT
CCTAAAAAGA CCGTTGTTTG CCAGATAGCC CCGGCTCCCA GAGCAGCCCT CGGAGAAGAA
TTTGGCCTGG GTTCCGTTGA TGTAACTAAA AAAGTCGTAA CAGCTCTGCG TAAAATAGGT
TTTGACAAAG TCTTCGACAC AGTATTCACA GCCGATATGA CAACCATCGA AGAGTCCAAT
GAATTTTTAA GCAGGCTTGT AAAGGGAGAG AATCTTCCCC TCTTTACCTC CTGTTGCCCC
GGTTGGGTAA AATATGCGGA GGAATTCCAT CCTGAACTGC TTAGCAATTT ATCGAGTTGC
CGGTCACCAC AACAAATGTT TGGTGCTGTA TTAAAGAAAA AGTACGCCAA GGAACTGGGG
ATTGCCCCAC AAGATATGTT TGTGGTATCG GTGATGCCCT GTACCGCTAA AAAATATGAA
GCAAAACGTC CGGAGTTTAC CACCGAAGGC GCCTATGATG TAGACGCAGT ATTAACAACT
GTTGAAGCTG CCCGGATGAT TAAAGAAGCT GGCATTATTT TCAATACACT AGAAGAATCG
GAATTTGACC AACCGATGCA ACAAGCTACC GGTTCTGGAG TATTGTTTGG TACCACTGGT
GGGGTAATGG AATCTGTCAT TCGTTACGTT GCCGGGAAAC TTCTCAATGC AGAAGGCCGA
GTTGACGTAG AATTCACCCG TGGTATGGAA GATACTAAAA TTGCCAGCAT AAATGTAGGT
GACAATAAGC TAAATCTGGC TGTGGTAAAT GGACTGTCTG CCACAGAAGC TTTAATTCAA
AAGATCCAGT CTGGTGAATT AGATGTTCAG GCAGTAGAAG TTATGGCTTG TCCCGGTGGC
TGTGTAGGAG GCGGCGGCCA GCCCTTCCAA AATGATAACG AACACCGCAA AGCCAGGGCC
AGTGAAATTT ATGGTATTGA TGCAAAACTA GAGCTTCATA AAGCACAGGA TAATGAAGAT
CTAAATAAAA TTTTTGAAAA ATATTGGGGT GGTTGCTGCA ACCATGATAC CCACCATGAT
TTGCACACCC ACTATAATCC CAAAAGACGT GTTGCCGGTA ATGAAATTGT AATCAAAGAT
GGTAATGGTC CAGAAATAAC CGTATGTATT GGCGAAGGTT GCATGAAAAA AGGTTCCATT
AGTTTAATAG AAAAGCTAGT TAACTTACCA GTTAAAGTCA AAGGTGTTTT CTGTCTAGAA
AACTGTGGCA ACGGTGTATC CGTTAAGGTT AATGATGAAA TCCTACACGT CACTCCAGAA
AATGCTTTAG AATCCATTCA AAAAAAGTGC GGTTGTAGTT GTGGTTGCTG CTCTAAATAG
 
Protein sequence
MSGKITINGQ IIDFTDEKNI LAVARKVGID IPTLCYHPEL TIAGACRLCV VEIERMGVQA 
SCSTAPTDGM VVYTNSEKVN RVRKMVLELL LANHDRECTT CDSSGACKLQ KYANDYGIKR
LRYPNRTTMA PLDTSSLSIV RDPNKCILCG LCVRVCKEKQ GIGVWDFKNR GSRTDIVAAM
DQPLSESACI NCGQCIAVCP TGALTSNSSS IQEIWAAIRD PKKTVVCQIA PAPRAALGEE
FGLGSVDVTK KVVTALRKIG FDKVFDTVFT ADMTTIEESN EFLSRLVKGE NLPLFTSCCP
GWVKYAEEFH PELLSNLSSC RSPQQMFGAV LKKKYAKELG IAPQDMFVVS VMPCTAKKYE
AKRPEFTTEG AYDVDAVLTT VEAARMIKEA GIIFNTLEES EFDQPMQQAT GSGVLFGTTG
GVMESVIRYV AGKLLNAEGR VDVEFTRGME DTKIASINVG DNKLNLAVVN GLSATEALIQ
KIQSGELDVQ AVEVMACPGG CVGGGGQPFQ NDNEHRKARA SEIYGIDAKL ELHKAQDNED
LNKIFEKYWG GCCNHDTHHD LHTHYNPKRR VAGNEIVIKD GNGPEITVCI GEGCMKKGSI
SLIEKLVNLP VKVKGVFCLE NCGNGVSVKV NDEILHVTPE NALESIQKKC GCSCGCCSK