| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1647 |
|---|
| Symbol | |
|---|
| ID | 4955256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 1801389 |
|---|
| End bp | 1802612 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640180823 |
|---|
| Product | tyrosyl-tRNA synthetase |
|---|
| Protein accession | YP_001113000 |
|---|
| Protein GI | 134299504 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0162] Tyrosyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00234] tyrosyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00531566 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGATT TTCAAAAACA ACTTGAGATT ATTAGACGGG GCGTGGCAGA GATTGTTCCT
GAAGAGGAAC TGGTAGAGAA GTTAAAAAAG TCTGTTGCCA GTAATAAACC TTTACATATT
AAGCTGGGAC TAGACCCCTC GGCCCCAGAT ATTCACCTGG GTCATACTGT TGTGTTGCAA
AAATTGCGTC AGTTTCAGGA ACTGGGCCAC AACATTACTA TTATTCTGGG TGATTTTACA
GGTCGAATTG GCGATCCCAC TGGCAAATCC GTAGCAAGAA AACCATTAAC GGAAGAAGAA
GTACTGGCCA ATGCCAGGAC CTATGAACAA CAAATCTTTA AAATTTTAGA TCCAGAAAAA
ACCAAAGTAC ACTTTAATAG TACATGGCTT GCTCCCTTAA AATTTGAAGA TGTTATAAAA
TTAGCTGCAA CTACTACGGT CGCCAGAATG TTGGAACGCG AGGACTTTAC AAAACGCATG
AGGGAAAATT TACCCATCAG CATTCATGAG TTTTTCTATC CTTTAATGCA AGGCTATGAT
TCTGTTGCCC TGGAAGCAGA TATAGAAATG GGAGGGACGG ATCAAAAATT CAACTTGTTA
ATGGGACGAA CTTTGCAAAA GGAATTTGGC CAAGAACCAC AGGTTGCAAT CATGATGCCA
ATTCTTGAGG GCCTTGATGG TGTAAATAAA ATGAGTAAGA GTCTAGGTAA CTATATCGGT
ATTGATGAAC CACCACAAGA AATGTACGGA AAAACAATGT CTCTTCCAGA TGAGTTAATG
GTGCGCTATT TTGAGTTGGT TACACCAGTG CCTTTAGAAG AAGTTAAAGC AATTGCCAAG
GGGTTGGAGG ATGGTTCGCT GCATCCCAGG GATGTGAAGA TGAGATTGGG CAGAGAAATT
GTGACATTCT ACCATGGACC CGAGGCGGCC CTGCAAGCAG AAGATCATTT TAAAACGGTC
TTTCAAAAGG GGGAAATCCC TGATGAAATA GATGAGTTTT TAGTCTCGGG GGATTTACTT
GAAGAAGGTT TAGTAGCGTT ACCCAAGCTT CTAACCCAGG CTAAGCTAGC TGGTACCAAT
AGCGAAGCAA GGAGGCTTAT AAAAGAAGGG GCAGTAAAAA TTAACGGAGA GAAAGCAACT
GATCCCAATA TGAGATTGAA ACCACAAGAA GGTATGATTA TTCGGACGGG TAAACGTAAA
TTTGCTAAAC TGATATTGAA ATAA
|
|---|
| Protein sequence | MLDFQKQLEI IRRGVAEIVP EEELVEKLKK SVASNKPLHI KLGLDPSAPD IHLGHTVVLQ
KLRQFQELGH NITIILGDFT GRIGDPTGKS VARKPLTEEE VLANARTYEQ QIFKILDPEK
TKVHFNSTWL APLKFEDVIK LAATTTVARM LEREDFTKRM RENLPISIHE FFYPLMQGYD
SVALEADIEM GGTDQKFNLL MGRTLQKEFG QEPQVAIMMP ILEGLDGVNK MSKSLGNYIG
IDEPPQEMYG KTMSLPDELM VRYFELVTPV PLEEVKAIAK GLEDGSLHPR DVKMRLGREI
VTFYHGPEAA LQAEDHFKTV FQKGEIPDEI DEFLVSGDLL EEGLVALPKL LTQAKLAGTN
SEARRLIKEG AVKINGEKAT DPNMRLKPQE GMIIRTGKRK FAKLILK
|
|---|
| |