Gene Dred_1605 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_1605 
Symbol 
ID4956174 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp1744646 
End bp1745392 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content42% 
IMG OID640180780 
Productpolysaccharide deacetylase 
Protein accessionYP_001112958 
Protein GI134299462 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID[TIGR02764] polysaccharide deacetylase family sporulation protein PdaB 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0764982 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGAGTTT TTGTTTTTGA CTACCGTAAA TTTAAAAAAC AAGTACTGCT TTTGGGAACT 
TTCTTTCTCT GTGCCGTTTT CTTCACAACC ATGTTATATC AGCAACAGAT GCTGCCAACC
ACTGCAAAAA AATATGCCAT TTATAAAGTA AAAACCGATA AAAAGGTGGT GGCCTTAACC
TTTGATATTA GTTGGGGCAC CAAAGTGCCG GGTCCGGTTC TGGATACCTT AAAAAAACAC
AATGTTAAAT CCACCTTTTT CATTTCGGGT CCCTGGGCCG TAAAACACCC TGAATTTCCC
AAAAGAATTG TGGCAGAGGG ACATGAAATA GCCAGCCACG GTGAAGAACA CGTAAACCTA
AGCGAATACA ACAAGGATGA AGTAAAGAAA AACATTCTTA CGGCACATGG TAAAATTAAA
GAAGTCACCG GCGTAGAACC ATCTTTAATT CGTACACCTA ATGGCGACTG GAACGACATG
GTACTTACCA CCGCAGAGGA ACTAAATTAC CGCGTCATCC AGTGGAGTGC CGATTCACTG
GATTGGAAAA AACCCGGTGT ACAGGCCATT GTGGATCGAG TTTTAAAAAA AACAGAACCT
GGTGCAATTA TCCTAATGCA TGCCAGTGAC ACTTGTCTCC AAACGCCTGA AGCACTGCCC
CAGGTGCTGG AAGGTCTTAA AGAAAAGGGT TATACATTGG TAACTGTTTC GGAACTTCTT
AAACATGGCG AAGGAACCAT CGATTAA
 
Protein sequence
MRVFVFDYRK FKKQVLLLGT FFLCAVFFTT MLYQQQMLPT TAKKYAIYKV KTDKKVVALT 
FDISWGTKVP GPVLDTLKKH NVKSTFFISG PWAVKHPEFP KRIVAEGHEI ASHGEEHVNL
SEYNKDEVKK NILTAHGKIK EVTGVEPSLI RTPNGDWNDM VLTTAEELNY RVIQWSADSL
DWKKPGVQAI VDRVLKKTEP GAIILMHASD TCLQTPEALP QVLEGLKEKG YTLVTVSELL
KHGEGTID