| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1599 |
|---|
| Symbol | |
|---|
| ID | 4956389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 1737914 |
|---|
| End bp | 1740565 |
|---|
| Gene Length | 2652 bp |
|---|
| Protein Length | 883 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640180774 |
|---|
| Product | DNA polymerase I |
|---|
| Protein accession | YP_001112952 |
|---|
| Protein GI | 134299456 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
|---|
| TIGRFAM ID | [TIGR00593] DNA polymerase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCCCTGG ATACCATCAT TATTATCGAC GGCAACAGCC TAATTCATAG AGCTTTTCAT
GCCATCCCCC TGCTTTCCAA CAGTAAAGGG GTTATTACCA ACGCTGTATA TGGTTTCACT
AATATGGTTT TAAAGGTTAT CAAAGAGCAG GAGCCGGGTC TTGTTGCTGT TGCCTTTGAT
AAAGGCAAAA CCACGTTCCG AAACCAGGAA TATGCCGCAT ATAAAGGTAC CCGTAAAGCT
ACCCCCGATG AACTGCGCCC TCAATTTATC CTGGCCAGGG ATATCTTGGG AGCGATGCGA
ATACCCTTCT TTGAATTGGA TGGCTTTGAG GCCGATGATT TAATCGGTAC CATTGCTTGC
CAGGCCGAGG CCACTGGACT CAACGTGTTA ATTCTTACCG GTGATAGGGA CGCTTTGCAA
CTGGTGTCTC CTAAAACCAA GGTTATGCTG ACCCGTAAAG GGATCACAGA AATTGACTTA
TTTGATGAAG GTAAGGTCTG GGACAAGTAT GGTGTTACTC CAAGTCAGGT TGTGGATTTA
AAAGGTCTGC AAGGGGACAC CTCGGATAAT ATCCCCGGCG TTGCCGGTAT CGGAGAAAAA
ACCGCCAGTG TATTAATTAA AGAATACGGA TCTGTGGAAG AAATCTTAAA AAACATTGAT
AAGCTCTCCC CCAGGCACCA GAAACTCTTA CGAGGAAATG AAGAGATTGC ACTTCTTTCA
AAGAAACTGG CCACTATTAT CCGGGACGTC CCCATGGAAC TGGATTTATC TGAATGTTCC
TGGCACGGAC CCGATAACCA AAAGCTTCTG GAAATAGCCA AGGAGCTTGA ATTTAAAACC
CTGATTAAGC AACTTACCTC CGGTCAAAAA TTTATAAAAC AAAGCCAAGA CAGTGGAACA
TCTGCTGATT TGCCACCTTT AGAAACCTAT CAAGTGGGTT ATCTAAATGT AACGGATCAA
GATGCCCTTG ATGAACTTCT CATTGAGGTT AGTCGCCAGG GAAAAGTTGC CATTTATCTG
GAAGGTTTGA GAAATCAAGG GATTGACACT GCCTATTTGG CAATGGAGGA TCACGATATA
TACAGATTGG CTATCCAAAA CAAAGACAGT GACTCGGACC CCTGCCTGAC TGTGCTGAAG
GCCATTTGTG AATGTGAGAG TGTCAAAAAA TATTTTCACG ATGCCAAGCA GGCCCTGTGG
ATGTTGCACC ACCATAGCAT TGAACTGAAG GCATTGGCCG CCGACACCAT GGTATCGGCC
TACCTGCTAA ATCCTACGGC CTCCAACTAC GATATTAATG ATGTGGCCTT AGAGCATCTG
GGCATGGTAT TGCCTGCGGA GGGCGAGACG GCAATGGCCA GCAGAGCTGA GGCTATCCGC
CGGTTGGCCC AGAAACTATT TGAAAAGTTG GCTGAGCGTC AGGAAGACAG ATTGCTAACA
CAGGTGGAGT TGCCTCTGGT ACGCATTCTG TCTGAGATGG AAATTGCCGG CGTAGCCGTT
GATAAGCAGG GTTTACAGGA CATGTCTGTG GAACTTCAAA CTGTAACAGA AACCCTGACG
ACCAAAATCC ACGAACTGGC CGGTGAGAAC TTTAACATTA ATTCCCCCAA ACAATTGGGG
CCCATTCTCT TTGAGAAGCT TAAGCTACCT GTACTTAAAA AAACCAAAAC GGGGTATTCC
ACCGACGCAG AGGTTCTGGA GAAACTGGCC GAGGAGCACG AGATAGTCGC CTTAATTCTG
GAATATCGGC AAATGGCCAA ATTAAAATCC ACCTATACCG ATGGTCTTGC GGCCCTGGTG
GACCCTCAAA CAGGGCGGCT GCATTCAACC TTTCACCAAA CGGTTACCGC CACTGGACGG
TTATCAAGTG CAGAACCAAA TTTACAAAAC ATTCCCATCC GGTTGGAAAC CGGCAGGAAA
ATTCGCAAGG TGTTTATTCC CCGTCAAAGG GGTAATCTAA TCCTGACAGC GGATTATTCT
CAAATCGAAT TGAGAGTGCT TGCCCATATG TCCCAAGACG AAAGCTTCTT GGATGCATTT
CGGCAGGGTC AAGATATCCA TACCCGAACT GCTTCGGAGG TTTTTGGCGT ACCCATGGAT
CAGGTGACCT CGGAAATGCG AAGTCGGGCC AAGGCTGTCA ACTTCGGTAT CGTTTATGGC
ATCAGTGACT TTGGACTAGC TCGGGATTTA AAGGTGTCAC GCAAAGAGGC CCAGGGTTAT
ATCGATCATT ACTTTGCACG CTGCCCGGGG GTTCGGCAAT ATATTGACAG GGTTATCAAA
GAGGCAAAAG AAACCGGCTA TGTTAACACA TTGTTAAACC GCCGCCGTTA CCTGCCGGAA
TTATTCAGCA AAAACTTCAA TATTCGTAAC TTCGGGGAAC GAGCTGCCAT GAATACTCCT
ATACAGGGCA CTGCTGCGGA TATCATAAAA CTGGCCATGG TTAAAATCAG CCAGCAGCTC
AAAGAGCAAA ATCTTTCTTC TCAAATGGTC CTACAAGTTC ATGACGAATT AATTTTTGAT
GCACCGGAAA ACGAAATCGA GTCATTGATA ATGCTGGTTC GCCAAAGTAT GGAAAACGCA
TTACAATTAG ACGTACCACT AGTGGTGGAC ATTAAGCTTG GTCCCAATTG GTACGAAGCT
AAGCCCATTT AA
|
|---|
| Protein sequence | MSLDTIIIID GNSLIHRAFH AIPLLSNSKG VITNAVYGFT NMVLKVIKEQ EPGLVAVAFD
KGKTTFRNQE YAAYKGTRKA TPDELRPQFI LARDILGAMR IPFFELDGFE ADDLIGTIAC
QAEATGLNVL ILTGDRDALQ LVSPKTKVML TRKGITEIDL FDEGKVWDKY GVTPSQVVDL
KGLQGDTSDN IPGVAGIGEK TASVLIKEYG SVEEILKNID KLSPRHQKLL RGNEEIALLS
KKLATIIRDV PMELDLSECS WHGPDNQKLL EIAKELEFKT LIKQLTSGQK FIKQSQDSGT
SADLPPLETY QVGYLNVTDQ DALDELLIEV SRQGKVAIYL EGLRNQGIDT AYLAMEDHDI
YRLAIQNKDS DSDPCLTVLK AICECESVKK YFHDAKQALW MLHHHSIELK ALAADTMVSA
YLLNPTASNY DINDVALEHL GMVLPAEGET AMASRAEAIR RLAQKLFEKL AERQEDRLLT
QVELPLVRIL SEMEIAGVAV DKQGLQDMSV ELQTVTETLT TKIHELAGEN FNINSPKQLG
PILFEKLKLP VLKKTKTGYS TDAEVLEKLA EEHEIVALIL EYRQMAKLKS TYTDGLAALV
DPQTGRLHST FHQTVTATGR LSSAEPNLQN IPIRLETGRK IRKVFIPRQR GNLILTADYS
QIELRVLAHM SQDESFLDAF RQGQDIHTRT ASEVFGVPMD QVTSEMRSRA KAVNFGIVYG
ISDFGLARDL KVSRKEAQGY IDHYFARCPG VRQYIDRVIK EAKETGYVNT LLNRRRYLPE
LFSKNFNIRN FGERAAMNTP IQGTAADIIK LAMVKISQQL KEQNLSSQMV LQVHDELIFD
APENEIESLI MLVRQSMENA LQLDVPLVVD IKLGPNWYEA KPI
|
|---|
| |