| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1525 |
|---|
| Symbol | |
|---|
| ID | 4956138 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 1654036 |
|---|
| End bp | 1655997 |
|---|
| Gene Length | 1962 bp |
|---|
| Protein Length | 653 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640180700 |
|---|
| Product | signal transduction histidine kinase, nitrogen specific, NtrB |
|---|
| Protein accession | YP_001112880 |
|---|
| Protein GI | 134299384 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0183917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCAAAAAA AAGCATTAAA ATATCTGTCC AGAACGAAGC AACAAATTGC TAAAAACAAG
CAACTAACAC AAGAAATAAA TGAATTAAAT AAGAAATGGA ATGCAATGAC ATTGGGGTAC
TGCAGCAGAA TCTTATCGAA CCTAAGTTTA CTCTTGGATA AACTTGAAGC AGTGGTTTAT
GTAAGTGATT TGGAAACCTA CGATATTTTA TTTATAAATA ACTTTGGCAG ACAAATTTTT
GGTCAGGGAG AAAATTTGTT AGGTAAAAAG TGCTATTCTG TACTTCAAGG AAAAGACCAC
CCCTGCGAAT TTTGTACTAA TAATAAATTG GTGCAGGATG GGGAACCGCA AGTTTACGTT
TGGGAATTTT TAAATCAAAT AACTAATAAA TGGATGAAAT GTGTAGACTA TGCTGTGCCT
TGGTTTGATG GACGCCTGGT AAGATTGGAA ATTGCTTTAA ATATTAGCGA TAATAAAATC
CTAAAAAGTG AGTTGAATAA ATATCAAGAA CAGTTGGAAT CCTTATTTAA AGAACGCACC
GTAGCATTAA AAGAAAATAA GAATCGTTAT GAAGCCATTA TCAAGTCACT TCCGGTGGGT
GTTTATCAGA CAAGCCCGGA AGGATATTGT GTTTACACCA ATGAAGAGAC AAGTAGGATA
GTAGGTATAC CAAAAGAGAA TATGATTGAT TATCTGTGGA CTCGTTCCTT GCATCCGGAG
GATAAAAAAA GCGTAATTAT TAAGTGGGTT AAATGTGTTA AGAAAAAAAT TCCCTTTCGT
AAAGAGGTAA GGATTGTGCG GCCAGATGGC AATGTTGTTT GGAGCATCGC ACTGGCTAAC
CCCTACGTGA GTCATGATGG TAAATTATGG TATGTGGGGA CGATTATGGA TATTACAGGA
AGAAAAAAAG GAGAAGACAG ACTTCGCTTG TCCAATGAGA GGTTCTCAAA GGCCTTTAAT
GCAAGTTCCA ACCCGATGGC CATAATTTCT TTGGAATCAG GAACAACCCT TGATGCAAAT
GAGGCTTTTC TAACACACAC TGAGTACACA AAAAAAGAAA TAATAGGCTG TAAAATACTT
GAACTTAGTT TAATGCTTTC CTTTGACCAA GTCTTTTTAA GCGAAATCAG AGAAGCCATG
CAAAACAAAA AACCCATTAA AAATTATGAG CTTCGTATAT GCTCAAAAAA TAGAGTCCTT
CGCTATGGTT TACTTTCTAC CGATATTATA GAATTGAATG ATGAAGCTTG TATGTTAGTT
AATTTTAATG ATCTCACTGA AAGAAGACAG ATGGAGCGGG AACTGGCAAG GCTGGATCGA
TTAAATATAG TGGGTCAAAT GGCTGCGGGA ATCGGGCATG AAATTCGTAA TCCCATGACC
AGTGTAAGGG GATTTTTACA ACTGCTGAAA AATAAAGATG AATGTGTTAA GTACACCGAT
TATTTTAATC TCATGATAGA GGAATTGGAT AGGGCTAATT CCATTATTAC AGAATACTTA
TCCTTGGCTA GACGGCAAGG CGCGAACCTT AAAATGCAAA ATATGAATGA TATCCTGGAT
GCCTTACATC CTTTAATACA ATCTGACGCT AACAATTGCA ATGTAAATTT AAAGATTCAA
AAAGAAACGG TACCTGATAT ATTACTAAAT GAAAAGGAAC TAAGACAACT TATCTTGAAT
TTGGTTCGAA ATGGTCTTGA TGCCATGCCA GAAGGAGGTA CCTTAATACT AAAGACCCAA
AAAAAAGGTA AAAAAGTAGT CCTTTCAGTC CAAGATCAAG GAAAGGGGAT TGCCCACTCA
ATCATGGATA AGCTTGGCAC TCCCTTTGTG ACGACGAAGG ATAACGGAGT TGGCTTGGGC
CTGGCCACTT GCTATTCAAT AGCATCCAGA CACAAGGCAA ATATCATAGT TAGCTCAAGT
TCAAGGGGTA CAAACTTTAT GGTGGAGTTT AAAAACAGTT AG
|
|---|
| Protein sequence | MQKKALKYLS RTKQQIAKNK QLTQEINELN KKWNAMTLGY CSRILSNLSL LLDKLEAVVY
VSDLETYDIL FINNFGRQIF GQGENLLGKK CYSVLQGKDH PCEFCTNNKL VQDGEPQVYV
WEFLNQITNK WMKCVDYAVP WFDGRLVRLE IALNISDNKI LKSELNKYQE QLESLFKERT
VALKENKNRY EAIIKSLPVG VYQTSPEGYC VYTNEETSRI VGIPKENMID YLWTRSLHPE
DKKSVIIKWV KCVKKKIPFR KEVRIVRPDG NVVWSIALAN PYVSHDGKLW YVGTIMDITG
RKKGEDRLRL SNERFSKAFN ASSNPMAIIS LESGTTLDAN EAFLTHTEYT KKEIIGCKIL
ELSLMLSFDQ VFLSEIREAM QNKKPIKNYE LRICSKNRVL RYGLLSTDII ELNDEACMLV
NFNDLTERRQ MERELARLDR LNIVGQMAAG IGHEIRNPMT SVRGFLQLLK NKDECVKYTD
YFNLMIEELD RANSIITEYL SLARRQGANL KMQNMNDILD ALHPLIQSDA NNCNVNLKIQ
KETVPDILLN EKELRQLILN LVRNGLDAMP EGGTLILKTQ KKGKKVVLSV QDQGKGIAHS
IMDKLGTPFV TTKDNGVGLG LATCYSIASR HKANIIVSSS SRGTNFMVEF KNS
|
|---|
| |