| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1415 |
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| Symbol | |
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| ID | 4956525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | + |
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| Start bp | 1530326 |
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| End bp | 1533793 |
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| Gene Length | 3468 bp |
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| Protein Length | 1155 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640180590 |
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| Product | UvrD-like DNA helicase, C terminal |
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| Protein accession | YP_001112770 |
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| Protein GI | 134299274 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3857] ATP-dependent nuclease, subunit B |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02773] ATP-dependent nuclease subunit B |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCCTTC GCTTTATTGT TGGAAGAGCG GGAAGCGGGA AAAGCCACAG TTGTTTAGAA
GAAGTGCGAC AGAGACTCCG ACAAAATCAG GGAGAATCGT CCATAATTCT GTTGGTCCCA
GAACAGGCCA CATTTCAATA TGAATATATG CTGGCAACCA CGCCAGAGCT AAAGGGAATG
ATTTGGGCTC AGGTATTGAG CTTTCGTCGT CTGGCCTTTC GAGTACTGCA AGAAATGGGC
GGTGCAGCCA GAGCCCACAT TGACGATTTG GGTAAAAAGA TGGTACTCAG ACGGATTCTC
GAGCAGCGTA AGTCAGAGTT AAAAGTATTT CACCGTGCGG CTAAGCAACC GGGATTTGCC
GATAGCCTAG CCAGTGCACT TTCGGAATTA AAGCTCTACC GTATCGAGCC TCAGGAGTTA
CAAAAGGGAA TACAGCATAT GCAAGAGGCA CCGGGCAGCG CCATTCGGGA TAAGTTAGCC
GATCTGAGTC TGCTATACAA TGACCTGGAA GAATTTTTGT CAGGACGTTT TACCGACCCG
GATGATTATT TGAATTTATT GGCCCAACGT CTCCCTGGTT CCCGCACTGT TCAGGGTGCA
GAAATTTTTA TCGATGGTTT CACTGGCTTT ACACCCCAGG AATACGGTGT TATTGAGCAA
ATGCTGGGTA CCGCAGACAG GGTACATGTG GCTCTGTGTT TTGACCCAAT GTACTTACAA
GAGCCATGTG ATGAATTAGA GTTCTTCTAC CCCACAGTAG AGACTTACCA CACCCTGCTG
GATATGGCAG GTGCTCTAAG AATTTCCCTT GAACCGCCAA TAATTTGTGG GAAAGAAACT
CCTGTTCGTT TTCAAAAAGA CTCTGCCATA GCACATTTGG AGAAATACTA CTTCCGTCAC
CCGTTGCAAG CCAGTGATGC TGCCCAGGGA GTTAGTCTGG TGGCTTGTGC CAACAGGCGG
GCGGAGGTAG AAGCAGCAGC AAGGGAAATT ATACGCCTTT GCCGTGAAGA AGAGCTAAGC
TGGCGGGATA TTGTTGTTGT ACTAAGGGAT TTGACTAACT ACAGTGATCT AATTAATACA
ATTTTTAACG ATCATGGCAT ACCGGTCTTT ATTGATGAGA AGAGAAATGT TCTCCACCAC
CCTCTGGTTG AATTAATACG TAGTGCTCTA GAGGTAATCA CCCAGCATTG GGCCTATGAT
CCGGTCTTTC GATATTTAAA AACCGATTTG ATACCAGTGC AGCGTGACGA CGTAGATAGG
TTGGAAAACT ATGTATTAGC ACATGGCATT CGAGGTAACC GTTGGAACGA TAACAGGGAT
TGGACTTACC GCAGACAATA TACCTTGGGT GAAGATTGTG ACATTGATGA CAATGAGGCA
GAGCAATTGG CCCAGCTTAA TGTTGTTCGC TATGCGGCCA TTGAGCATAT AAATAATTTT
TCAAAAAAGG TTGCCAACTG CGGTAATGTA CGGCAGATAA CCACTGCCCT TTTTGAACTT
TTGGAATCTT TATCTGTGGC AGAACGGATG GAAGCATGGG CTAAGGAAGC TGAGGTAGCC
GGTCGACTTA TTGAAGCCAA AGAACATGCC CAAATTTGGG ATAATGTAAT CCTATTATTG
GATGAAATTG TTGAGGCAAT GGGAGAGCAA GAACTAAACC TGGAAGAATA CCTTCAGGTA
TTGGAGGCAG GACTGGAGAG TTTAAAATTG GGTCTAATTC CACCGGGATT AGACCAGGTG
GTGGTGGGGA CCCTAGAGCG TTCCCGTAAT CCCAATGTAA AGGCTGCCTT GGTGCTAGGT
ATCAGTGATG GAGTTTTGCC AGCGCGGCCT GTTGAAGAGG GACTATTCAG TGACTATGAG
CGGGAAGCAC TGAGGGAAAT AGGCTTAAAT TTGGCTCCGG GTGCTAGAAG AAAACTTTTT
GATGAGCAGT ATTTAATATA TACAGCCTTG ACCAGAGCCA GTAGTCGGTT ATGGCTGAGT
TATCCCCAGG CTGACGATGA GGGAAAGGCA TTGATGCCAT CCCCGGTAAT TCAGCGGGTA
AAGGAATTGC TTCCCCTTAT TCAGGAAGAA ATTTTACCGG TAGAACCGCC TTGCCTGGGG
GGAGATCTAG CTTTTATAGC CAATCCTAGC AGGAGCTTAT CTTACCTGGC GGCCATGCTG
AGGGAAACAG TGGCGGGACG ATTGGTGGAC CCTGTTTGGC AGGATGTTTA TTCCTGGTTT
GTGCAACAAC CACAATACCA AGAGTCTTGC CGCAGGGTTT TAGCGGGTCT TTATCATGTA
AACCAGGAAA CATCTCTGCC GCCTAGTATG GGGCGCAGGT TGTACGGCAG TAGATTAAGG
GCCAGTGTAT CTAGGCTGGA ACGGTTTACT ACCTGTCCCT TCTCTCATTT TCTTTCCCAT
GGCTTGAAAC TAAAGGAACG TTCCCAATTT AAATTAGCGG CACCGGATTT AGGACAGTTT
TTCCATGCAG CCCTCAAGCT CTTTGCCGAA CGAATTAAAG CACTTTCTTT AGACTGGGGT
CAACTATCAC GTGGGCAAAT TATAACTATC ACCGGGGAAA TCGTGGAAGA GTTGGCTCCT
CAACTGCAAA ATGAAATTCT TCTCAGCACT GCCCGCCATC GCTATTTAAT TAAGAAACTG
AGAAGAACCC TGGAAAGAGC TGTGGTTACC CTGGCAGAGC ACGCCAGAAG AGGTTCCTTC
CGGCCGGTGG CGGTGGAGAT TGGCTTTGGC GATAATGCTG AACTACCAGC TGTTCAATTG
GATTTGGCAG ATCACTGTCA GATGGAAATG GCGGGTCGCA TTGATAGGAT AGACAGTGCC
TGTGAGGGTG GCCAGCACTA CTATTCTCTT ATAGACTACA AGTCCGGTCA GCCAGATATT
AAGTTGGCTG ATATTGTGCA TGGTTTAAAG CTGCAGCTAC TTACTTACTT GGATGTAGCA
CTACGGTATT CCAAGCAGTT GACACAGCAG GAGGCCTTAC CCGCTGCCAT GTTGTACTTT
AGTGTACGGG ATCCTTTTGT TGCCAGTACA GGTCCCATGA CAGAGGAAGA AGCTGAAAAG
AATCTACTCA AACAATTAAA GATGAAAGGT TTGCTGTTGG CCGATCCACT GGTGATTAGC
AAGATGGATA AAGAACTGAG CGGACAATCC GACCTATTAC CGGTGGGATT GAAGAAAAAC
GGAGATTTTT ACTCCAATTC CAGGGTTATC ACAGAAGAGC AGTTTAAGTT ATTGCGAAAT
TACCTGGAAT TTAAATTAAA GTCCATCGGT CAGCAAATGG TGAGCGGTGA TATTGCCATC
AGCCCCTATC AGAGGGGAAA AGAAAAAGCT TGCCGTTATT GTATCTTTAA ATCAGTATGT
CAGTTTGACC CTTTGCTGGA GGATAATTTG TTCCGATTGC TGGCCGACCA AGAGGAGCAG
GTACTTTGGT CGCTGATTAA AGAAAGTCTG GGTGATAAGC ATGAGTGA
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| Protein sequence | MSLRFIVGRA GSGKSHSCLE EVRQRLRQNQ GESSIILLVP EQATFQYEYM LATTPELKGM
IWAQVLSFRR LAFRVLQEMG GAARAHIDDL GKKMVLRRIL EQRKSELKVF HRAAKQPGFA
DSLASALSEL KLYRIEPQEL QKGIQHMQEA PGSAIRDKLA DLSLLYNDLE EFLSGRFTDP
DDYLNLLAQR LPGSRTVQGA EIFIDGFTGF TPQEYGVIEQ MLGTADRVHV ALCFDPMYLQ
EPCDELEFFY PTVETYHTLL DMAGALRISL EPPIICGKET PVRFQKDSAI AHLEKYYFRH
PLQASDAAQG VSLVACANRR AEVEAAAREI IRLCREEELS WRDIVVVLRD LTNYSDLINT
IFNDHGIPVF IDEKRNVLHH PLVELIRSAL EVITQHWAYD PVFRYLKTDL IPVQRDDVDR
LENYVLAHGI RGNRWNDNRD WTYRRQYTLG EDCDIDDNEA EQLAQLNVVR YAAIEHINNF
SKKVANCGNV RQITTALFEL LESLSVAERM EAWAKEAEVA GRLIEAKEHA QIWDNVILLL
DEIVEAMGEQ ELNLEEYLQV LEAGLESLKL GLIPPGLDQV VVGTLERSRN PNVKAALVLG
ISDGVLPARP VEEGLFSDYE REALREIGLN LAPGARRKLF DEQYLIYTAL TRASSRLWLS
YPQADDEGKA LMPSPVIQRV KELLPLIQEE ILPVEPPCLG GDLAFIANPS RSLSYLAAML
RETVAGRLVD PVWQDVYSWF VQQPQYQESC RRVLAGLYHV NQETSLPPSM GRRLYGSRLR
ASVSRLERFT TCPFSHFLSH GLKLKERSQF KLAAPDLGQF FHAALKLFAE RIKALSLDWG
QLSRGQIITI TGEIVEELAP QLQNEILLST ARHRYLIKKL RRTLERAVVT LAEHARRGSF
RPVAVEIGFG DNAELPAVQL DLADHCQMEM AGRIDRIDSA CEGGQHYYSL IDYKSGQPDI
KLADIVHGLK LQLLTYLDVA LRYSKQLTQQ EALPAAMLYF SVRDPFVAST GPMTEEEAEK
NLLKQLKMKG LLLADPLVIS KMDKELSGQS DLLPVGLKKN GDFYSNSRVI TEEQFKLLRN
YLEFKLKSIG QQMVSGDIAI SPYQRGKEKA CRYCIFKSVC QFDPLLEDNL FRLLADQEEQ
VLWSLIKESL GDKHE
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