Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dred_1413 |
Symbol | |
ID | 4956477 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfotomaculum reducens MI-1 |
Kingdom | Bacteria |
Replicon accession | NC_009253 |
Strand | - |
Start bp | 1528564 |
End bp | 1529535 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640180588 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001112768 |
Protein GI | 134299272 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1388] FOG: LysM repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00299984 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAAAAA GTAAACTTAT TTTACCAGGA TTACTAATTT CACTTTTGTT AAGTGCCAAC CCAGTCCTAG CGGCTGATTA TACCGTAAAA GATGGTGATT CCCTTTGGAA AATATCTCAA AAAAATAATA TCAGCATTGA TAAATTAAAG GCGATCAATG GTTTGAGCAA TGACCTTCTT TCTGTGGGAC AAGTTCTTCG TATTGATGGA ACCCCTGAGA CAAAGCAGGC ATCAACCGCT AAACAACAGC CCATGCCTCA GACCACAAAA ACTAACCAAA CTGGTTGGCT TCCTACGAAT ACCTCATTAG AGAGTCAGGA AAAACAGCCA AATACTGTGG CCTCTTATCG TCCCAACAAT ACGCTGTATA CTGTGAAACC AGGGGATACC CTGGGTGCCA TAGCGCAAAA GAACGGAATT AGTCTTGAAG ATTTACGCGG GCTTAATAAC CTGAAGGGTG ATTTAATCTA TGCCGGGCAA ACCTTGGTTT TAAAGGGTAG TGTTTCCCGA GGCGGGGATG TGCATCGTTC TGATTCCATA GATGAGAACT CCTCTGTACG TTATGGCCAA TTAGTTGATT GGTTCACTGA GGGAATTAAT ATTCTGAAAC CCAATAAAGT CTTTACCGTA ACCGATACGG CAACAGGAAA AATCATCAAA CTTCAAGTGC TGGGGGGAAG CAACCACTGT GATGTGGAAC CCTTAACAAA AGAAGACACT GAAACAATGT TAAGCCTCTT TACTGCTTGG ACTTGGACCC CCAGACCTGT TTGTATTCAT ATAGATGGAA GAGATATTGC CGCCTCCCTC TCTGGCATGC CCCATACAAC CATTGAAAAT ATAAAGGATA ATAATGTTAC CGGGCATTAT GATATGTATC TGCTAAATAG CAAACCCCAC GGTAGCGGTG TATCTCAAAG CTATGTTCAG CAGCATTACG ATGCTCTGGA AAGAGCAGCA AAAGTCGATT AG
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Protein sequence | MSKSKLILPG LLISLLLSAN PVLAADYTVK DGDSLWKISQ KNNISIDKLK AINGLSNDLL SVGQVLRIDG TPETKQASTA KQQPMPQTTK TNQTGWLPTN TSLESQEKQP NTVASYRPNN TLYTVKPGDT LGAIAQKNGI SLEDLRGLNN LKGDLIYAGQ TLVLKGSVSR GGDVHRSDSI DENSSVRYGQ LVDWFTEGIN ILKPNKVFTV TDTATGKIIK LQVLGGSNHC DVEPLTKEDT ETMLSLFTAW TWTPRPVCIH IDGRDIAASL SGMPHTTIEN IKDNNVTGHY DMYLLNSKPH GSGVSQSYVQ QHYDALERAA KVD
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