Gene Dred_1413 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_1413 
Symbol 
ID4956477 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp1528564 
End bp1529535 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content42% 
IMG OID640180588 
Productpeptidoglycan-binding LysM 
Protein accessionYP_001112768 
Protein GI134299272 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00299984 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAAAAA GTAAACTTAT TTTACCAGGA TTACTAATTT CACTTTTGTT AAGTGCCAAC 
CCAGTCCTAG CGGCTGATTA TACCGTAAAA GATGGTGATT CCCTTTGGAA AATATCTCAA
AAAAATAATA TCAGCATTGA TAAATTAAAG GCGATCAATG GTTTGAGCAA TGACCTTCTT
TCTGTGGGAC AAGTTCTTCG TATTGATGGA ACCCCTGAGA CAAAGCAGGC ATCAACCGCT
AAACAACAGC CCATGCCTCA GACCACAAAA ACTAACCAAA CTGGTTGGCT TCCTACGAAT
ACCTCATTAG AGAGTCAGGA AAAACAGCCA AATACTGTGG CCTCTTATCG TCCCAACAAT
ACGCTGTATA CTGTGAAACC AGGGGATACC CTGGGTGCCA TAGCGCAAAA GAACGGAATT
AGTCTTGAAG ATTTACGCGG GCTTAATAAC CTGAAGGGTG ATTTAATCTA TGCCGGGCAA
ACCTTGGTTT TAAAGGGTAG TGTTTCCCGA GGCGGGGATG TGCATCGTTC TGATTCCATA
GATGAGAACT CCTCTGTACG TTATGGCCAA TTAGTTGATT GGTTCACTGA GGGAATTAAT
ATTCTGAAAC CCAATAAAGT CTTTACCGTA ACCGATACGG CAACAGGAAA AATCATCAAA
CTTCAAGTGC TGGGGGGAAG CAACCACTGT GATGTGGAAC CCTTAACAAA AGAAGACACT
GAAACAATGT TAAGCCTCTT TACTGCTTGG ACTTGGACCC CCAGACCTGT TTGTATTCAT
ATAGATGGAA GAGATATTGC CGCCTCCCTC TCTGGCATGC CCCATACAAC CATTGAAAAT
ATAAAGGATA ATAATGTTAC CGGGCATTAT GATATGTATC TGCTAAATAG CAAACCCCAC
GGTAGCGGTG TATCTCAAAG CTATGTTCAG CAGCATTACG ATGCTCTGGA AAGAGCAGCA
AAAGTCGATT AG
 
Protein sequence
MSKSKLILPG LLISLLLSAN PVLAADYTVK DGDSLWKISQ KNNISIDKLK AINGLSNDLL 
SVGQVLRIDG TPETKQASTA KQQPMPQTTK TNQTGWLPTN TSLESQEKQP NTVASYRPNN
TLYTVKPGDT LGAIAQKNGI SLEDLRGLNN LKGDLIYAGQ TLVLKGSVSR GGDVHRSDSI
DENSSVRYGQ LVDWFTEGIN ILKPNKVFTV TDTATGKIIK LQVLGGSNHC DVEPLTKEDT
ETMLSLFTAW TWTPRPVCIH IDGRDIAASL SGMPHTTIEN IKDNNVTGHY DMYLLNSKPH
GSGVSQSYVQ QHYDALERAA KVD