| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1408 |
|---|
| Symbol | |
|---|
| ID | 4956354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 1520735 |
|---|
| End bp | 1522657 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640180583 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_001112763 |
|---|
| Protein GI | 134299267 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAACC GGATTAGTTT GTGTATGATC GTTAAAAATG AGGAAGGTAA CATACGTCGG
TGTCTGGCAA GTGTTACCGG TGTTGTTAAC GAAATAATTG TAGTAGACAC GGGGTCCACT
GATAATACCT GTAAAATAGC CCGTGAAATG GGAGCAAGAA TTTACTCCTT TGAGTGGAAT
AATAACTTCA GTGATGCCCG CAACTTTTCT TTAGCCAAGG CTACAGGTGA TTGGATTTTA
TTTTTAGATG CTGATGAGGA ACTTGCTGGG GAGAGTAGAG AGGTACTGGT CAAGTATGTG
GCTGATGAGC AGGTGGAGGG TTACTTTATT AAAATTATTA ACTATCTAGG CAAAGAGGGC
TGGACGGAAA CCTGCCCGGA TCTGGTCTTT CGGCTTTTTA AAAACAGGTC ACAATACAGG
TTTCGTGGGG CCATACATGA GCAAATAGCT GATGTTATCC TGGAAAAAAA CAAACAGGCT
ACCTATCGTA TAGCAGAAGA TATTATTATC ATTCACTACG GATATTTAGA CAGTCAAATA
GACCAGAAGG ATAAAAAAAA CAGGAATCTT CATATCATTC AAAAGGAAAT GGTAGAGAAC
CCGGGAAATT ACCTGTTGAA ATACCACTAC GGAGTGGAAC TGTACCGGGC TGAAAGATAC
GGGGAAGCAG CGGAGGTATT GATTCAGGCA GCTAACAATA CAGATAGCAG TACCATCTAT
TTCCCCAAGT TATTAAGGTA TATTGTTCTT GCTTACCATT CCGGCGGTCA GCCGGCAAAA
GCCCTAGATG TAATCAGGCA GGGGCTGCAG CTTTTCCCCA ACTATGCAGA CTTGCATTAT
TACGGTGGAC TTAGTTTACT GCAGTTAAAA CACTACCATA AAGCTGTAGA GCTTTTCTTA
CAAGCGGTTG CCTTACCGGA ACAGCCGCCT CAATATGCTT CCTTTGCCGG GGTAAGGGGT
TTTAGGTCCT TGTATCACCT GGGTGAAATA GCAGAAGTTT TTTTAAACTA CGAAGAAGCG
CTACGCTATT ACCTGGAAAG CTTACGTGAC AATCCCGGCT TTCAACCTGC CCTGGAAAGG
ATTATTAAAA TCCTAAAACC TAGGGAAAAC CCTGAATACA CCAGGGAATG TTTGGAAAAA
GTCCTTGACT TTAGCAGTCC CCAGGCCACT CTTATCCTGT CAAATATATT TTTTCAACAA
GGGGCCTATA AGTTAACTTT AGAATTTTTG GAAAGATTAA TCAGAATGGG TAACTCATCT
GCAGAAATAC TTTTTAGAAA GTCCTTTTGT TTAATACAGG AAAGAAGGTT TCTGGAAGCT
CTCAGGATAT TGAATGAATA TACTGCGGAC AGCTATATTT ATCCCCTGGC AAAATTTAAC
CAAATATTAT GTTTTTGGGT TCAGGGCAAA AAGCGAAAGG TTCGATCCCT TGTTCAGGAA
ATTCGCACCC TAGAACCTGC GGAGGACACG GAGAGTATTT TAAGACTTTT ATTAAGGTCT
CAGGAAAAGA GAAAATATGT TCACAGAATA TTCCTGGGTA AAGATGCTGT TACACTTTTA
CTGGATATAG TCGGGAGATT GCTTTATCTT AGCGAACTGA CCAGGGTAGA AGAACTCTTT
AGCAGGGTAG ACCCTAAATG CTTGGGTGAT CGGATGTTGG ACATTATAAG ACTTTACCAC
GAGCATGGTT ACTATGAAAA AACAGTAGAA CTTTTACAAG AATATATAGA AGCAAACCAG
AACGGTGAGG CTCATTTTTT ACTGGCGGAA ACCCACCGGG AGTTAGGGGA TTTTATAGAG
GCTGACCACC ATTACCGTTA CGCCATCGAG CTTGACCCGT CCCAGCCACG CTACTATATT
AGCCAAAGTA AGCTTTACGA GGATCGGTCT GAGAAGATCA AAGGGGAGGT TCCTCTTGAA
TGA
|
|---|
| Protein sequence | MGNRISLCMI VKNEEGNIRR CLASVTGVVN EIIVVDTGST DNTCKIAREM GARIYSFEWN
NNFSDARNFS LAKATGDWIL FLDADEELAG ESREVLVKYV ADEQVEGYFI KIINYLGKEG
WTETCPDLVF RLFKNRSQYR FRGAIHEQIA DVILEKNKQA TYRIAEDIII IHYGYLDSQI
DQKDKKNRNL HIIQKEMVEN PGNYLLKYHY GVELYRAERY GEAAEVLIQA ANNTDSSTIY
FPKLLRYIVL AYHSGGQPAK ALDVIRQGLQ LFPNYADLHY YGGLSLLQLK HYHKAVELFL
QAVALPEQPP QYASFAGVRG FRSLYHLGEI AEVFLNYEEA LRYYLESLRD NPGFQPALER
IIKILKPREN PEYTRECLEK VLDFSSPQAT LILSNIFFQQ GAYKLTLEFL ERLIRMGNSS
AEILFRKSFC LIQERRFLEA LRILNEYTAD SYIYPLAKFN QILCFWVQGK KRKVRSLVQE
IRTLEPAEDT ESILRLLLRS QEKRKYVHRI FLGKDAVTLL LDIVGRLLYL SELTRVEELF
SRVDPKCLGD RMLDIIRLYH EHGYYEKTVE LLQEYIEANQ NGEAHFLLAE THRELGDFIE
ADHHYRYAIE LDPSQPRYYI SQSKLYEDRS EKIKGEVPLE
|
|---|
| |