| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1282 |
|---|
| Symbol | |
|---|
| ID | 4958105 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 1369013 |
|---|
| End bp | 1370311 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640180459 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001112641 |
|---|
| Protein GI | 134299145 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4277] Predicted DNA-binding protein with the Helix-hairpin-helix motif |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTTGC TTGAAAAATT AAAAATTTTA GCTGATGCGG CCAAATATGA TGTATCCTGT
TCCTCCAGTG GAAGTAGGCG CAAAAATACA AAGGGCGGGA TTGGAAACGC TGCCACCAGT
GGGATTTGTC ATAGCTGGTC CCAGGATGGA AGATGCATTT CACTATTAAA AATACTTCTT
ACCAATTATT GTGTCTTTAA CTGTGCCTAT TGTGTCAATC GAGTGTCAAA CGACCTGCCA
AGGGCTGCTT TCACACCAGA TGAAGTTGTT GATTTAACTA TTAATTTTTA CAGACGAAAT
TATATAGAAG GGTTATTCTT GAGTTCGGCC ATTTGGCAAA ATCCTAATCA TACTATGGAA
CTTCTACTGC AAACCGTAAA AAAACTAAGA GTGGAGCAAC GTTTTAATGG ATATATTCAC
TTGAAGGCCA TACCCGGAGC AGATTGGAGA TTGATAGCAG AGGCAGGAAC CCTGGTTGAC
AGGATGAGCG TTAATATTGA ACTGCCTTCC AGTGAGGGAC TAAAATTGTT GGCACCACAA
AAAAGAAAAG AAACCATTAT GAAACCCATG GGCCTGATCG GGTCACAGAT TTTGGAGTGC
AGTGAGGAAC AAAAACGGTC CAGGAAGGCT CCATCCTTTG TTCCTGCAGG CCAAAGCACT
CAATTAATCA TCGGCGCCAC CCCGGATACA GATTTAAAGA TAATCCAGCT TTCAGAAAAC
CTTTATCATC ATTTTAATCT AAAAAGGGTT TATTACTCCG CCTACGTCCC TGTATCCAAT
GCACCTGTAC TACCACAAAT GGCCAGTCCA CCTTTGAAGC GTGAAAATCG TTTATATCAA
GCCGATTGGT TGCTTCGCTA TTATGGATTT AAGGCACAGG AGCTTCTTTC CAATGATAAT
CCAAATTTTC ATCTTGACCT TGACCCAAAA TCTGATTGGG CCCTTCGTAA CCTTCATTTA
TTCCCTGTGG AAGTTAACAA GGCAGATTAC AACGTGATAC TACGTGTACC GGGTATTGGA
GTAAAATCAG CTAAAAAAAT AATAATTGCA CGAAAGTTTC ACTCTCTAAG TTTTGAAGAC
TTGCAAAAAA TTGGCGTGGT TTTAAAAAGG GCACGTTATT TTATTACCTG CAAAGGAAGG
TATTATGGTG CAGTCCCCTT CAAAGAAGAG GCCATTAAAA ACCATTTGAT TCCTGCCCAT
AAAAAAGAAC CTGCTTATAC GCAGCTTTCC CTATTTTCGG AGCCTGCTTT CGGTTACCAG
CTTGCGGATG CTCAAAGCAG TATTACGGGG GAAATATGA
|
|---|
| Protein sequence | MELLEKLKIL ADAAKYDVSC SSSGSRRKNT KGGIGNAATS GICHSWSQDG RCISLLKILL
TNYCVFNCAY CVNRVSNDLP RAAFTPDEVV DLTINFYRRN YIEGLFLSSA IWQNPNHTME
LLLQTVKKLR VEQRFNGYIH LKAIPGADWR LIAEAGTLVD RMSVNIELPS SEGLKLLAPQ
KRKETIMKPM GLIGSQILEC SEEQKRSRKA PSFVPAGQST QLIIGATPDT DLKIIQLSEN
LYHHFNLKRV YYSAYVPVSN APVLPQMASP PLKRENRLYQ ADWLLRYYGF KAQELLSNDN
PNFHLDLDPK SDWALRNLHL FPVEVNKADY NVILRVPGIG VKSAKKIIIA RKFHSLSFED
LQKIGVVLKR ARYFITCKGR YYGAVPFKEE AIKNHLIPAH KKEPAYTQLS LFSEPAFGYQ
LADAQSSITG EI
|
|---|
| |