Gene Dred_1151 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_1151 
Symbol 
ID4955328 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp1221884 
End bp1223173 
Gene Length1290 bp 
Protein Length429 aa 
Translation table11 
GC content47% 
IMG OID640180320 
Product3-phosphoshikimate 1-carboxyvinyltransferase 
Protein accessionYP_001112510 
Protein GI134299014 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0128] 5-enolpyruvylshikimate-3-phosphate synthase 
TIGRFAM ID[TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.317212 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACTGG TAATCAACCC TGTAAAAAAA CTACGAGGAA ATGTTTCAGT GCCCGGGGAT 
AAATCTATAT CACATAGGGC AGTTATGGTT GGGGCTTTAG CCCAGGGAAT CACAGAAGTG
AGTAATTTTT TAATGGGGGA AGACTGTCTT GCCACTGTTA AGTGTTTAAG AGCCATGGGA
GTATCCATTG AGGGCCCTAC CAATGGCAAG TTAAAGATTT ATGGTGTGGG CTTGCAAGGA
CTGCGTGAAC CTGCGGATCT ATTGGATACT GGAAATTCCG GGACAACCAC CCGTTTATTA
ATGGGGATTC TTGCCGGTCA ACCCTTTACG AGTATCATTA CTGGGGATCA GTCCCTAAAG
AAAAGACCCA TGGCTCGGGT TACTAAACCC CTACAGGATA TGGGAGCTTC CTTTTTAGGC
CGAAATCAAA ATAATCTCTT ACCCATGGCT GTTCAAGGCG GCAAGCTAAA ACCCATTGAT
TTTCATTCCC CGGTTGCCAG TGCTCAGGTA AAGTCCGCTG TCTTATTTGC AGGGTTATTT
GCGGAAGGCT ATACCTCTGT AACGGAACCT GCTGTGTCCA GGGATCATTC TGAACGGATG
TTAAAGGCCT TTGGTGCTGA GGTAGAGGTG AAGAATCAAA CTGTTCGAAT AAAGGGGCTC
CCCCAACTAA AAGGAATGAA AATCACAGTT CCCGGGGATA TTTCCTCCGC GGCATTTCTC
ATGGTTGCAG CGGCAATTCT TCCTGGCTCA GACATAACCA TACAGGGGGT TGGGATCAAT
CCAACCCGTG ACGGTATTCT TGAGGTCCTT AAACAAATGG GTGCAGGAAT AGAAATTATG
CATAGCCGAT TGCAGGGTGG TGAGCCTGTG GGAGATATTC GGATAAAGGG TGCAGAACTA
CAGGGGACTG AGTTATCTGG CCCAATCATA CCTAGACTGA TAGATGAGAT TCCTATTATC
GCTGTGGCTG CAGCTTATGC CCGGGGAACT ACAGTAATTC GTGATGCTTC AGAGCTGAAA
GTAAAGGAAA GTAACCGTAT CTCCTCAGTG GTAAGGGAAT TAAGGAAGTT TGGTGCAACC
GTTGAAGAAC TTTCCGATGG TCTAATCATC CAGGGAGGTA CGCCTTTATC AGGTGCTGTT
TGTCAAAGTT ATGGGGACCA CCGGATGGCT ATGGCCATGG CGGTGGCGGG CTTAGCTGCC
AGTGGTCAAA CATTAATCGA ACAAGCGGAT TGTATTCCTG TTAGCTTCCC AGGGTTCAGT
GATGTATTAA AAGAGGTAAT TGTAGAATAA
 
Protein sequence
MELVINPVKK LRGNVSVPGD KSISHRAVMV GALAQGITEV SNFLMGEDCL ATVKCLRAMG 
VSIEGPTNGK LKIYGVGLQG LREPADLLDT GNSGTTTRLL MGILAGQPFT SIITGDQSLK
KRPMARVTKP LQDMGASFLG RNQNNLLPMA VQGGKLKPID FHSPVASAQV KSAVLFAGLF
AEGYTSVTEP AVSRDHSERM LKAFGAEVEV KNQTVRIKGL PQLKGMKITV PGDISSAAFL
MVAAAILPGS DITIQGVGIN PTRDGILEVL KQMGAGIEIM HSRLQGGEPV GDIRIKGAEL
QGTELSGPII PRLIDEIPII AVAAAYARGT TVIRDASELK VKESNRISSV VRELRKFGAT
VEELSDGLII QGGTPLSGAV CQSYGDHRMA MAMAVAGLAA SGQTLIEQAD CIPVSFPGFS
DVLKEVIVE