| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1139 |
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| Symbol | |
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| ID | 4955351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | + |
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| Start bp | 1211436 |
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| End bp | 1213172 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640180308 |
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| Product | signal transduction histidine kinase, nitrogen specific, NtrB |
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| Protein accession | YP_001112498 |
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| Protein GI | 134299002 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism
[COG3852] Signal transduction histidine kinase, nitrogen specific |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATTGATC GATTAATTTC GGTGCCACAT TTGAACCAGT TAGTCCTTTA TTCAATATGG
GAAAAATTTA TTAATGGTCA GAGAATAGAA ACAAAAGATC TTTTTTCGGA AACATATAAA
GCCTGGTTAC GATGTGTGGA ATATAGGATT AACCCTTATC AGATAACAAC GGAAAGCTTA
TCAGAGGAAG AACTAAGTTA TAGGAAATCA AAATTAACAG ATATGCTTGA ATTGCTTACT
CCCCATATCG AGACGATTAA AACGACCCTT AGTACCCATA GTGATACTTT TCTCATCTTA
ATAACAGACC ACGAGGGATT TATTTTAGAG TCCTTCACAG GCAAGGATAG CACCAAGGAT
TTAATCAATG TACCCTACGC ACCTGGCATA GGTTATGCTG AACACCTTGC TGGTAACAAT
GGTATTGGGT CAGTATTGGC TACGGGTATT CCTCTAGCAG TATTAGGAGC AGAGCATTTT
GTGAAGGATT TTCACCGTTG GTCCTGTGTT GGCTCACCTA TTATTGGTGA TAAAGGCGAT
ATTATTGCGG TACTGGGAGT CTTTATGCCC TGTGGTATGG AAAGTCCTTA CACCTTTAGT
TTAACCGTAG CCGCAACAAA GGCAGTTGAG GCTGCCATCA AACAAGGCCA AATGGAAAAA
CAACTGCAGG ATACAAGAAA GACACTGAGA AATCTCATGC AACAGAGGAA CATTATCTTT
AATGCTATGT CCCAGGGGGT GATAATTTTA AATCATGAAG GAATTGTCAC CTTTTTTAAT
AAAGCAGCCG AAGAAATATG GCATATTAAT GCCGATGAAC TAGTTGGTAG ACCTTTCTTT
TGTTTCAGCC GTTGTCGTCG TGCGGAACCT TTGTTGATTC GTTCCTTAAA AGAAGCAAAT
TCCTTTACAA ACATAGAATG TAAGTGTAGT AATTTATTGC ATGAAAAATA TATTTTGGTT
AATATTAGCC TGCTGCGGGA TGAAAAAAAT GCTGTATCAG GTGCCATCGG AATTTACACA
GATGTTACCG AATTACGTCG GCAGGAAGCT CGTATTCGGG AGCAAGAGAA ACTAGCAGTG
GTGGGCCAGA TGGCTGCAGG CATGGCTCAT GAAATAAGAA ATCCCCTTAC TTCGGTACGT
GGGTTTGCTC AATTGATGAG CGAAAAAATG GCAGAAGAAC AAAACCCTTA TAAAGAATTT
ATGGAAATCA TGATCCAAGA AATTGATCAG GCTGACAGCT TTATCAATAA TTTTCTCCAG
TTAGCCAGAC CAAAACCGCC TAAAATGCAA GCTTGTTCAT TAAATCAACT TATCCTTAAT
TTTATTAAAA TATTTGAGTC CCAGGCCTTT TTGCAGGGTG TAAAAATAGG GATAGATTTG
GGGGAAATAC CTACTATTGT AATTGACAAA GATCAAATTA AACAAGTTTT GTTGAATCTT
TGTCAAAATG CTCTTCAAGC AATGAATATG CAGGGTACCA TCACCATAGC CACTCGTTTC
CACGCTGCAG AAAAGGAAGT GAGTCTATCA GTCAGAGATA ATGGACCTGG TATTCCAGGG
GATAATATAG ATAAATTGGG AACACCCTTT TTTACCACAA AGGACAAAGG AACAGGACTT
GGATTATCCA TTTCCTATAC CATTGTGGAT AAGCACCAGG GTCGTATTGA AGTAGAAAGT
ACAATTGATG AAGGGACTTG CTTCAAGGTT TACCTACCGG TGTACGAACA GTTCTAA
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| Protein sequence | MIDRLISVPH LNQLVLYSIW EKFINGQRIE TKDLFSETYK AWLRCVEYRI NPYQITTESL
SEEELSYRKS KLTDMLELLT PHIETIKTTL STHSDTFLIL ITDHEGFILE SFTGKDSTKD
LINVPYAPGI GYAEHLAGNN GIGSVLATGI PLAVLGAEHF VKDFHRWSCV GSPIIGDKGD
IIAVLGVFMP CGMESPYTFS LTVAATKAVE AAIKQGQMEK QLQDTRKTLR NLMQQRNIIF
NAMSQGVIIL NHEGIVTFFN KAAEEIWHIN ADELVGRPFF CFSRCRRAEP LLIRSLKEAN
SFTNIECKCS NLLHEKYILV NISLLRDEKN AVSGAIGIYT DVTELRRQEA RIREQEKLAV
VGQMAAGMAH EIRNPLTSVR GFAQLMSEKM AEEQNPYKEF MEIMIQEIDQ ADSFINNFLQ
LARPKPPKMQ ACSLNQLILN FIKIFESQAF LQGVKIGIDL GEIPTIVIDK DQIKQVLLNL
CQNALQAMNM QGTITIATRF HAAEKEVSLS VRDNGPGIPG DNIDKLGTPF FTTKDKGTGL
GLSISYTIVD KHQGRIEVES TIDEGTCFKV YLPVYEQF
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