Gene Dred_1139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_1139 
Symbol 
ID4955351 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp1211436 
End bp1213172 
Gene Length1737 bp 
Protein Length578 aa 
Translation table11 
GC content39% 
IMG OID640180308 
Productsignal transduction histidine kinase, nitrogen specific, NtrB 
Protein accessionYP_001112498 
Protein GI134299002 
COG category[K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms 
COG ID[COG3284] Transcriptional activator of acetoin/glycerol metabolism
[COG3852] Signal transduction histidine kinase, nitrogen specific 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGATTGATC GATTAATTTC GGTGCCACAT TTGAACCAGT TAGTCCTTTA TTCAATATGG 
GAAAAATTTA TTAATGGTCA GAGAATAGAA ACAAAAGATC TTTTTTCGGA AACATATAAA
GCCTGGTTAC GATGTGTGGA ATATAGGATT AACCCTTATC AGATAACAAC GGAAAGCTTA
TCAGAGGAAG AACTAAGTTA TAGGAAATCA AAATTAACAG ATATGCTTGA ATTGCTTACT
CCCCATATCG AGACGATTAA AACGACCCTT AGTACCCATA GTGATACTTT TCTCATCTTA
ATAACAGACC ACGAGGGATT TATTTTAGAG TCCTTCACAG GCAAGGATAG CACCAAGGAT
TTAATCAATG TACCCTACGC ACCTGGCATA GGTTATGCTG AACACCTTGC TGGTAACAAT
GGTATTGGGT CAGTATTGGC TACGGGTATT CCTCTAGCAG TATTAGGAGC AGAGCATTTT
GTGAAGGATT TTCACCGTTG GTCCTGTGTT GGCTCACCTA TTATTGGTGA TAAAGGCGAT
ATTATTGCGG TACTGGGAGT CTTTATGCCC TGTGGTATGG AAAGTCCTTA CACCTTTAGT
TTAACCGTAG CCGCAACAAA GGCAGTTGAG GCTGCCATCA AACAAGGCCA AATGGAAAAA
CAACTGCAGG ATACAAGAAA GACACTGAGA AATCTCATGC AACAGAGGAA CATTATCTTT
AATGCTATGT CCCAGGGGGT GATAATTTTA AATCATGAAG GAATTGTCAC CTTTTTTAAT
AAAGCAGCCG AAGAAATATG GCATATTAAT GCCGATGAAC TAGTTGGTAG ACCTTTCTTT
TGTTTCAGCC GTTGTCGTCG TGCGGAACCT TTGTTGATTC GTTCCTTAAA AGAAGCAAAT
TCCTTTACAA ACATAGAATG TAAGTGTAGT AATTTATTGC ATGAAAAATA TATTTTGGTT
AATATTAGCC TGCTGCGGGA TGAAAAAAAT GCTGTATCAG GTGCCATCGG AATTTACACA
GATGTTACCG AATTACGTCG GCAGGAAGCT CGTATTCGGG AGCAAGAGAA ACTAGCAGTG
GTGGGCCAGA TGGCTGCAGG CATGGCTCAT GAAATAAGAA ATCCCCTTAC TTCGGTACGT
GGGTTTGCTC AATTGATGAG CGAAAAAATG GCAGAAGAAC AAAACCCTTA TAAAGAATTT
ATGGAAATCA TGATCCAAGA AATTGATCAG GCTGACAGCT TTATCAATAA TTTTCTCCAG
TTAGCCAGAC CAAAACCGCC TAAAATGCAA GCTTGTTCAT TAAATCAACT TATCCTTAAT
TTTATTAAAA TATTTGAGTC CCAGGCCTTT TTGCAGGGTG TAAAAATAGG GATAGATTTG
GGGGAAATAC CTACTATTGT AATTGACAAA GATCAAATTA AACAAGTTTT GTTGAATCTT
TGTCAAAATG CTCTTCAAGC AATGAATATG CAGGGTACCA TCACCATAGC CACTCGTTTC
CACGCTGCAG AAAAGGAAGT GAGTCTATCA GTCAGAGATA ATGGACCTGG TATTCCAGGG
GATAATATAG ATAAATTGGG AACACCCTTT TTTACCACAA AGGACAAAGG AACAGGACTT
GGATTATCCA TTTCCTATAC CATTGTGGAT AAGCACCAGG GTCGTATTGA AGTAGAAAGT
ACAATTGATG AAGGGACTTG CTTCAAGGTT TACCTACCGG TGTACGAACA GTTCTAA
 
Protein sequence
MIDRLISVPH LNQLVLYSIW EKFINGQRIE TKDLFSETYK AWLRCVEYRI NPYQITTESL 
SEEELSYRKS KLTDMLELLT PHIETIKTTL STHSDTFLIL ITDHEGFILE SFTGKDSTKD
LINVPYAPGI GYAEHLAGNN GIGSVLATGI PLAVLGAEHF VKDFHRWSCV GSPIIGDKGD
IIAVLGVFMP CGMESPYTFS LTVAATKAVE AAIKQGQMEK QLQDTRKTLR NLMQQRNIIF
NAMSQGVIIL NHEGIVTFFN KAAEEIWHIN ADELVGRPFF CFSRCRRAEP LLIRSLKEAN
SFTNIECKCS NLLHEKYILV NISLLRDEKN AVSGAIGIYT DVTELRRQEA RIREQEKLAV
VGQMAAGMAH EIRNPLTSVR GFAQLMSEKM AEEQNPYKEF MEIMIQEIDQ ADSFINNFLQ
LARPKPPKMQ ACSLNQLILN FIKIFESQAF LQGVKIGIDL GEIPTIVIDK DQIKQVLLNL
CQNALQAMNM QGTITIATRF HAAEKEVSLS VRDNGPGIPG DNIDKLGTPF FTTKDKGTGL
GLSISYTIVD KHQGRIEVES TIDEGTCFKV YLPVYEQF