| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1076 |
|---|
| Symbol | |
|---|
| ID | 4955850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 1146636 |
|---|
| End bp | 1147520 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640180246 |
|---|
| Product | polyprenyl synthetase |
|---|
| Protein accession | YP_001112436 |
|---|
| Protein GI | 134298940 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00179719 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACTTTA AGGAAGAATT AAAGCAATGG TCCCAAAAAG TGGATGAAGC GTTGGACCGA
TATATACCGT CTTCCGATGC TTATCCCTCG GTCATTCATG AAGCCATGCG TTACAGTATT
TTTGCAGGGG GTAAAAGGTT AAGACCCATC CTGGTGCTGG CGGCGACCCA AGCTGTGGGC
GGCAATACTG AAAAGGTAAT GCCCGTGGCC TGTGCCATGG AACTGATCCA TACCTACTCA
CTTGTCCATG ATGACCTACC TGCTATGGAT AATGACGATT TTCGGCGGGG CCGTCCTACA
AATCATAAGG TATATGGGGA AGCCATGGCT ATTCTGGTGG GAGATGCTTT ACAAACTTTA
GCCTTTGAAC TGATTGCCCA GACAACGGAA AGTTTTGAAG CTGATAGGGT TAATCAGGTT
ACTTTAGAAA TTGCCAAGGC AGCGGGTTCC AGTGGGTTAA TTGGTGGTCA AGTGGTGGAC
ATCTTATCTG AGAATAGGGA TATAGATGGA GACACCTTGG AATACATCCA CCGACACAAA
ACCGGTGCCC TGTTTAGAGC CTCCATACGT GCAGGAGCTA TTCTCGGAGG GGCCACAGTC
AATCAATTGG CAGCCTTAAC CCTATACGCA GAGCAAATGG GTCTTGCCTT TCAGATCAAG
GATGATTTGT TGGATATAGA GGGTGATGAG GCAAAAATTG GTAAACCGGT GGGTAGTGAT
ATTAAAAATC AAAAATCTAC TTATCCATCT ATCTATGGAA TAGAAGAAGC GAAGAGAATG
GCTACGGAGG CCGCCGCAGA AGCGGTAAAT GCGATAAAAA TTTTTAATCA TAAAGCGGAA
TTTTTACAAG ACATCATGCA TTTTATTATC AATAGGGATC ATTAA
|
|---|
| Protein sequence | MNFKEELKQW SQKVDEALDR YIPSSDAYPS VIHEAMRYSI FAGGKRLRPI LVLAATQAVG
GNTEKVMPVA CAMELIHTYS LVHDDLPAMD NDDFRRGRPT NHKVYGEAMA ILVGDALQTL
AFELIAQTTE SFEADRVNQV TLEIAKAAGS SGLIGGQVVD ILSENRDIDG DTLEYIHRHK
TGALFRASIR AGAILGGATV NQLAALTLYA EQMGLAFQIK DDLLDIEGDE AKIGKPVGSD
IKNQKSTYPS IYGIEEAKRM ATEAAAEAVN AIKIFNHKAE FLQDIMHFII NRDH
|
|---|
| |