Gene Dred_1020 details

Gene Information

• Locus tag: Dred_1020
• ID: 4958531
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfotomaculum reducens MI-1
• Kingdom: Bacteria
• Replicon accession: NC_009253
• Strand: +
• Start bp: 1092835
• End bp: 1093368
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 640180190
• Product: shikimate kinase
• Protein accession: YP_001112380
• Protein GI: 134298884
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0703] Shikimate kinase

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAACA TTGTACTAGT TGGTTTTATG GGTTCCGGCA AAAGTTCCAT CGGTCATCGT 
CTGGCAAGAA AATTAGGGTA TCAGTTTGTG GATACAGACT ATGCCATCGA GGAAGTTACT 
GGACTCACAG TGGAACAAAT CTTTGCTAAA CATGGCATTA AACGCTTTCG AGGTGAAGAG 
GTTTTACTGG TAAGTAAGTT GGCAGATAAA GAAGGAGTTG TCATTGCCAC CGGCGGTGGC 
TTAGTTCTGA ATTCGCAAAA CGTAGAAAAG CTTCAGCAGA ATGGCATATT TATTTGTCTG 
CAGGCCTCCC CGGAAACCAT CTGCAAGAGA GTAAAAAACA AAAGAACACG TCCATTACTG 
GCCAGGGGTA ATCTGAAAGA AAAGGTTATA AAACTGCTGC AGGAACGAAA AGATGCCTAT 
GACATGGCAG ATTTGACAAT TAGTACCGAT CATTTAGAAC CAGATGATAT TGTTAAAATC 
ATCTATAAGT TTCTTTTGGA GAGGGGAGTC ATTCATGGGA ACCATTCAGG TTGA 

 

Protein sequence

MKNIVLVGFM GSGKSSIGHR LARKLGYQFV DTDYAIEEVT GLTVEQIFAK HGIKRFRGEE 
VLLVSKLADK EGVVIATGGG LVLNSQNVEK LQQNGIFICL QASPETICKR VKNKRTRPLL 
ARGNLKEKVI KLLQERKDAY DMADLTISTD HLEPDDIVKI IYKFLLERGV IHGNHSG